Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2279 ATGAAACGCTCAAACGACGACGTCGCCGCCCCCGTCTCAACCGCCAAGCCAGTGTTCTTAACCAAAGCCCAACGCGAGCAATTGGCTCTCCAGCGCCGCCACGAAGACGTCGCCGACCAGAAGCGCCGCCAGGAACAGCTCCTCTCCCGCAACCACTCCTCCGACCGCGACAGAGACAGAGAAAGGGACAGAGACCACCGAGACCGGGACCGTGATCGTGACCGAGACCGGGACAGGGACAGAGAACGCGAGCGCGAGAGGGCACGCGATCGGGACCGCGAAGCCGAACGCCGCAACAGAGAGAGGGAGCGCGAAGAGGAGACCCGGTCCCGTGAACGTGCCCGGTTGGAGAAACTCGTGGAGCGTGAGCGCGAGAAGGAGCTGGAATCCATCAAGGAGCAGTACCTGGGTTCCAAGAAGCCCAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACCTCGCGCGACATGAACTCCCTTTACCAGAACCCCCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGTATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGATATGCGCGATCAAATCCGCAAGAAAGACGGCATCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGATCTATACGACACCTTCGACATGCGCGTCGACCGGCATTGGAGCGAGAAGAAGCTCGAGGAGATGACGGAAAGGGATTGGCGTATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCGAAGATTCCTCGCCCTATGAGGAGCTGGAATGAGAGCAAATTGACCAGCGAGCTCCTGAAGGCGGTTGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCTGCCATTCCGCTTGGTTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGGAAGACCGCGGCTTTTGTGCTTCCTATGCTGAGTTACATCACCCGCCTTCCTCCCATTAGTGAAGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCCCAGCAGATTGAGGATGAGACCGTTAAGTTTGCTCAGTATTTGGGCATCAAGGTCGTCTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAGGGCTGTGAGATTGTCATCGCCACTCCCGGACGTTTGATTGATTGTTTGGAGCGCCGCTATGCTGTTCTCAACCAGTGCAACTATGTTGTTCTTGATGAGGCCGATCGTATGATTGACATGGGTTTTGAGCCCCAGGTGATGGGTGTCCTCGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAGGATGAGGAGCTTGACGAGAAGAAGATTTACCGTACCACCTATATGTTCAGCGCCACCATGCCGCCTGCTGTGGAGAGGCTTGCTAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGGCTGAGAAGTTTTACAAGCTTCAGAGGTTGCTTGATGAGCTTAACGACAAGACTGCCATTGTGTTTGTTAACACCAAGAGGAATGCGGATCATGTTGCCAAGAGTTTGGATAAGGAAGGGTATCGCGTGACTACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACGCACCGGATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACCACGTTCTTGACTCTTCAGGACTCTGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAAAGTAACAGTCCTGTTCCACCTGAACTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCAGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2106 0.5427 MKRSNDDVAAPVSTAKPVFLTKAQREQLALQRRHEDVADQKRRQEQLLSRNHSSDRDRDRERDRDHRDRDRDRDRDRDRDRERERERARDRDREAERRNREREREEETRSRERARLEKLVEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGIEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLTSELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKEAEKFYKLQRLLDELNDKTAIVFVNTKRNADHVAKSLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2279 701 CDD SF2_C_DEAD 519 648 - -
Gso7g2279 701 Pfam DEAD/DEAH box helicase 306 496 IPR011545 GO:0003676|GO:0005524
Gso7g2279 701 Gene3D - 512 699 IPR027417 -
Gso7g2279 701 MobiDBLite consensus disorder prediction 1 20 - -
Gso7g2279 701 Pfam Helicase conserved C-terminal domain 533 639 IPR001650 -
Gso7g2279 701 MobiDBLite consensus disorder prediction 669 701 - -
Gso7g2279 701 PANTHER - 86 694 - -
Gso7g2279 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 678 IPR001650 -
Gso7g2279 701 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 694 - -
Gso7g2279 701 Gene3D - 242 511 IPR027417 -
Gso7g2279 701 SMART helicmild6 558 639 IPR001650 -
Gso7g2279 701 MobiDBLite consensus disorder prediction 26 143 - -
Gso7g2279 701 MobiDBLite consensus disorder prediction 676 701 - -
Gso7g2279 701 SMART ultradead3 300 522 IPR014001 -
Gso7g2279 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 660 IPR027417 -
Gso7g2279 701 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 436 444 IPR000629 -
Gso7g2279 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 312 507 IPR014001 -
Gso7g2279 701 Coils Coil 85 129 - -
Gso7g2279 701 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 281 309 IPR014014 GO:0003724
Gso7g2279 701 CDD DEADc_DDX23 292 508 - -
Gso7g2279 701 MobiDBLite consensus disorder prediction 192 230 - -
Gso7g2279 701 MobiDBLite consensus disorder prediction 27 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2279 Gso-Chr7 46395548 46398138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2279 279 661 Eukaryotic Initiation Factors Gene Family AT3G19760 32.292 4.29e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2279 K12858 - gmx:100799264 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2279 7 46395548 46398138 Gso17g0038 17 461307 463932 GST