Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2272 ATGGAAACTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACAACCTCTGGGTTGAAGCTGTCAGTGTCAGACATGAACATGAACATGAGGCAGCAGCAGGTAGCATCATCAGATCAGAACTGCAGCAACCACAGTGCAGCAGGAGAGGAGAACGAATGCACGGTGAGGGAGCAAGACAGGTTCATGCCAATCGCTAACGTGATACGGATCATGCGCAAGATTCTCCCTCCACACGCAAAAATCTCCGATGATGCAAAGGAGACAATCCAAGAGTGCGTGTCGGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGTTGCCAGAGGGAGCAGCGCAAGACCATAACCGCAGAGGACGTGCTTTGGGCAATGAGTAAGCTTGGATTCGACGACTACATCGAACCGTTAACCATGTACCTTCACCGCTACCGTGAGCTGGAGGGTGACCGCACCTCTATGAGGGGTGAACCGCTCGGGAAGAGGACTGTGGAATATGCCACGCTTGCTACTGCTTTTGTGCCGCCACCCTTTCATCACCACAATGGCTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAACGCCACCAAATGCTGCGTCATCTCATCACCATCATGGAATCTCCAATGCTCATGAACCAAATGCTCGCTCCATATAA 672 0.5283 METGGFHGYRKLPNTTSGLKLSVSDMNMNMRQQQVASSDQNCSNHSAAGEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLATAFVPPPFHHHNGYFGAAMPMGTYVRETPPNAASSHHHHGISNAHEPNARSI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2272 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Gso7g2272 223 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Gso7g2272 223 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Gso7g2272 223 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Gso7g2272 223 Gene3D Histone, subunit A 48 169 IPR009072 GO:0046982
Gso7g2272 223 MobiDBLite consensus disorder prediction 199 223 - -
Gso7g2272 223 ProSitePatterns NF-YB/HAP3 subunit signature. 93 109 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso7g2272 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 166 - -
Gso7g2272 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 166 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso7g2272 223 SUPERFAMILY Histone-fold 59 158 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2272 Gso-Chr7 46325294 46327713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2272 1 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.194 3.61e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso7g2272 CBFD_NFYB_HMF 6.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2272 K08065 - gmx:100194424 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2272 7 46325294 46327713 Gso17g0044 17 519542 521902 GST