Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2259 ATGGTTTCTGCGGAGAAAGATTCCAATGAAACAACCAATACTCATCCAACCATCATCGGGAAGTCCATGCGAACGGTGCGCTCCAAACTATTCCAACACGACCGCGCTGCGTGCGTCTCCGACAACTTAACCGGTTCGCTAATGGAGCTCGCCTCGCGAAACAACAAATCCGTTAAATCTTCCATTACGGAGGAGCAACTCCTCGAGCTCTCTCAAGCTCTGAGCGATTTCTCCGCCTGTAGTAGCGATATCTCCGGCGAGCTCCAGAGGCTCGCCACCGTTTCCTCCTCCCAACCTCCTCCTGCTGCTCCTCACGTCGACGGCCAACCCCAACCTGAGCACGAGCCCTGCCTAGGGTTTCTCCAGAGGGAGAGCTTCTCCACCGAGATCATAGAGAGCATCTCGCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGGACTGCACTCGCCGTCTGTGGCCGTGAAGCGATCGGCGGCGGCCAAGCTGAGGCTGTTGGCGAAGAACCGAGCCGACAACCGCGCTCTGATCGGCGAGTCCGGCGCGGTGGCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAAGAACACGCGGTGACGGCGTTGCTGAACCTGTCTCTTCTGGAAGAGAACAAGGCGCTTATAACGAATGCCGGTGCGGTGAAGGCGCTGATTTACGTGCTGAAAACAGGCACAGAGACTTCAAAGCAGAACGCGGCGTGCGCGCTAATGAGTTTGGCGTTGGTGGAGGAGAACAAGAGCTCAATCGGGGCTTGCGGGGCAATACCGCCGCTGGTAGCGCTGCTGCTGAGTGGGTCCCAGAGAGGGAAGAAGGACGCGCTGACGACGCTGTACAAGCTGTGTTCGGTGAGGCAGAACAAGGAGAGGGCGGTGAGTGCCGGGGCGGTGAGGCCGCTGGTGGAGCTGGTGGCGGAGGAGGGGAGCGGAATGGCGGAGAAGGCGATGGTGGTGCTGAACAGCTTGGCGGGCATTGAGGAGGGGAAGGAGGCCATTGTGGAAGAAGGTGGGATTGGTGCGCTTCTGGAGGCGATTGAGGATGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTTTGACTCTTGTTCAGCTCTGTGCTCACAGCGTTGCCAACAGAGCCTTGCTTGTCAGGGAGGGAGGGATTCCGCCTCTCGTTGCTCTTTCCCAGAACGCCTCTGTTCGAGCTAAGCTCAAGGCCGAGACACTCCTTGGATATTTGAGAGAATCAAGACATGAAGCATCATGTTCAAGTCCTTAG 1287 0.5843 MVSAEKDSNETTNTHPTIIGKSMRTVRSKLFQHDRAACVSDNLTGSLMELASRNNKSVKSSITEEQLLELSQALSDFSACSSDISGELQRLATVSSSQPPPAAPHVDGQPQPEHEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLHSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVAALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKALIYVLKTGTETSKQNAACALMSLALVEENKSSIGACGAIPPLVALLLSGSQRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEEGSGMAEKAMVVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLVQLCAHSVANRALLVREGGIPPLVALSQNASVRAKLKAETLLGYLRESRHEASCSSP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2259 428 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Gso7g2259 428 Pfam Armadillo/beta-catenin-like repeat 256 294 IPR000225 GO:0005515
Gso7g2259 428 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 19 424 - -
Gso7g2259 428 MobiDBLite consensus disorder prediction 91 115 - -
Gso7g2259 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 265 307 IPR000225 GO:0005515
Gso7g2259 428 SMART arm_5 172 212 IPR000225 GO:0005515
Gso7g2259 428 SMART arm_5 213 253 IPR000225 GO:0005515
Gso7g2259 428 SMART arm_5 254 294 IPR000225 GO:0005515
Gso7g2259 428 SMART arm_5 336 376 IPR000225 GO:0005515
Gso7g2259 428 SMART arm_5 295 335 IPR000225 GO:0005515
Gso7g2259 428 SMART arm_5 378 418 IPR000225 GO:0005515
Gso7g2259 428 PANTHER U BOX DOMAIN-CONTAINING 19 424 - -
Gso7g2259 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
Gso7g2259 428 SUPERFAMILY ARM repeat 140 417 IPR016024 -
Gso7g2259 428 Gene3D - 282 419 IPR011989 -
Gso7g2259 428 Gene3D - 127 281 IPR011989 -
Gso7g2259 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 306 348 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2259 Gso-Chr7 46201769 46203872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2259 81 421 U-box Gene Family AT2G23140 44.286 4.84e-79 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2259 - - gmx:100792402 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2259 7 46201769 46203872 Gso17g0062 17 653906 656884 GST
Gso7g2259 7 46201769 46203872 Gso15g0976 15 9090353 9093423 PCT
Gso7g2259 7 46201769 46203872 Gso9g0093 9 848013 850684 PCT