Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2254 ATGCGTAAGGACGAAGCCAAGGCCCCCGGCGCCATGCCGCAGCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCTGCCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACACGGTCAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGTTAATTTATCGCGGGAAACAGCTCCAGTGGGAACAGACTCTTGCCGAGTGTTTCATTCAAAACGACGCCAACCTTCAATTAGTTGGCCGTATGCGCAGTACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCCGCGGCGAGACGGTTCACGATGCCTTGAAAACCGTCAAGGGTTTGATGACCAGTTACTTGAACATGACTCCCAGAATTGACAACGACTCTGCCTCTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCCGCTGTGCTTGTTATGCTCTATGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATATTTTGTCCAAGGCATTGCACGGCCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTCTCACGACCCTTTGTATCTCTTTTGTCGTAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGGTTCCGGTTCGGATAATGTTAAGGGGCTGGTTTTGATTCAGGATATTTTCCCCTTTGTTTGTGAGCTTGCTAACAGCTTGTTGAGGGATCTGGACTTGAGTATTGTGTCCCCCTCGGCCGCAGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTACTGCCTTTGAGGACTGGAATTAAGGAGCAACAGGCTGTCAAGGATTCTATGGCTCAAGACAAACACCACAAGCTCGCAGAAGAGATTGAATATCTTCATGGTTTGTACGTTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAGAGTTTGGCTGGCCAGGAAATGATGGAGGGGGATAATCTTTATCCTGCCTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCAAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGGGTGTTTTGACGCGGCAAAGAAGTGTGCTATGTCTGCTGATAGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTATGTAACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAGGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAGTCTTTTGAATACATCGCACGTGCTGAGCCTGACTCCCTGCATGCTGGCCTGTTTATGGAATTCAAAAACGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCTCTTTTCGTAGCTTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTTGGTATTGCTTTTGATCGTGCGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAAAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTGATTGATTCAGATGCATTAGGACTGACATTTGTTAGGGAGGTGGAGGAATTAGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAATCTTGCAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCACTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGCGAAAGGTTTTGCAGATATTCTCTCAAACTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGACCTTGATACGATGTTGCATGGGAGTGTTGCCATGTTTTCGTTGTAG 2094 0.4522 MRKDEAKAPGAMPQQQRSHIQFFVRMMSAGNTIVMQAFPEDTVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECFIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLMTSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNILSKALHGQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGVSYGSGSDNVKGLVLIQDIFPFVCELANSLLRDLDLSIVSPSAAGPLSNDVGDFSAFLLPLRTGIKEQQAVKDSMAQDKHHKLAEEIEYLHGLYVQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWGVLTRQRSVLCLLIVRYAKRTDEHQWILEHRYVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHKVQVGIAFDRAFFLQLAGNYIAIKDIRDADPYLYTSCKQILDMDADLIDSDALGLTFVREVEELGQRKVVELCPGGKNLAVNSKNRDKYVDLLIQDHFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDTMLHGSVAMFSL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2254 697 Pfam HECT-domain (ubiquitin-transferase) 497 691 IPR000569 GO:0004842
Gso7g2254 697 Gene3D Hect, E3 ligase catalytic domains 448 673 - -
Gso7g2254 697 Gene3D Hect, E3 ligase catalytic domain 568 650 - -
Gso7g2254 697 PRINTS Ubiquitin signature 31 51 IPR019956 -
Gso7g2254 697 PRINTS Ubiquitin signature 52 72 IPR019956 -
Gso7g2254 697 PRINTS Ubiquitin signature 73 94 IPR019956 -
Gso7g2254 697 SUPERFAMILY Hect, E3 ligase catalytic domain 443 690 IPR035983 GO:0004842
Gso7g2254 697 SMART hect_3 466 696 IPR000569 GO:0004842
Gso7g2254 697 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Gso7g2254 697 Gene3D - 13 112 - -
Gso7g2254 697 ProSiteProfiles Ubiquitin domain profile. 20 96 IPR000626 GO:0005515
Gso7g2254 697 SUPERFAMILY Ubiquitin-like 20 108 IPR029071 -
Gso7g2254 697 ProSiteProfiles HECT domain profile. 468 697 IPR000569 GO:0004842
Gso7g2254 697 SMART ubq_7 20 92 IPR000626 GO:0005515
Gso7g2254 697 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 8 693 - -
Gso7g2254 697 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 8 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2254 Gso-Chr7 46156802 46161168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2254 20 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.333 7.20e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2254 - - gmx:100801584 1395.18