Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2253 ATGTCTGTCATCGACACCCCCGCCGTTCACCACCGCAGCGGGGGCGCCACCGATCACCGTCACCCGTCCAAGCGCAAATTCGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAAGACGAGGCCAAGGCGGTGAATTCCTGGTCCGCCTCCTCCTCCTCCTCCTCCTCCGACGCCGGCGGCTGCTCCTCCTTGCAGCAGCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCTGCCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACACGGTCAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGTTAATTTATCGCGGGAAACAGCTCCAGTGGGAACAGACTCTTGCCGAGTGTTTCATTCAAAACGACGCCAACCTTCAATTAGTTGGCCGTATGCGCAGTACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCCGCGGCGAGACGGTTCACGATGCCTTGAAAACCGTCAAGGGTTTGATGACCAGTTACTTGAACATGACTCCCAGAATTGACAACGACTCTGCCTCTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCCGCTGTGCTTGTTATGCTCTATGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATATTTTGTCCAAGGCATTGCACGGCCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTCTCACGACCCTTTGTATCTCTTTTGTCGTAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGGTTCCGGTTCGGATAATGTTAAGGGGCTGGTTTTGATTCAGGATATTTTCCCCTTTGTTTGTGAGCTTGCTAACAGCTTGTTGAGGGATCTGGACTTGAGTATTGTGTCCCCCTCGGCCGCAGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTACTGCCTTTGAGGACTGGAATTAAGGAGCAACAGGCTGTCAAGGATTCTATGGCTCAAGACAAACACCACAAGCTCACAGAAGAGATTGAATATCTTCATGGTTTGTACGTTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAGAGTTTGGCTGGCCAGGAAATGATGGAGGGGGATAATCTTTATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCAAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGGGTGTTTTGACGCGGCAAAGAAGTGTGCTATGTCTGCTGATAGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTATGTAACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAGGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAGTCTTTTGAATACATCGCACGTGCTGAGCCTGACTCCCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCTCTTTTCGTCGCTTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAGAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGACTCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGCTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGTCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCGCACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGAAGAATGACAGCAGATCAAAGGAAGGTTCTTTTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCATCTATGGCTGTCATGAAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2604 0.4574 MSVIDTPAVHHRSGGATDHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSSSSSSDAGGCSSLQQQQRSHIQFFVRMMSAGNTIVMQAFPEDTVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECFIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLMTSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNILSKALHGQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGVSYGSGSDNVKGLVLIQDIFPFVCELANSLLRDLDLSIVSPSAAGPLSNDVGDFSAFLLPLRTGIKEQQAVKDSMAQDKHHKLTEEIEYLHGLYVQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWGVLTRQRSVLCLLIVRYAKRTDEHQWILEHRYVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIAIEDIRDADPYLYTSCKQILDMDADFIDSDSLGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFVKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKDRLEVITQEHIGCSFGTW* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2253 867 SMART hect_3 525 865 IPR000569 GO:0004842
Gso7g2253 867 MobiDBLite consensus disorder prediction 12 33 - -
Gso7g2253 867 CDD HECTc 506 865 IPR000569 GO:0004842
Gso7g2253 867 PRINTS Ubiquitin signature 90 110 IPR019956 -
Gso7g2253 867 PRINTS Ubiquitin signature 111 131 IPR019956 -
Gso7g2253 867 PRINTS Ubiquitin signature 132 153 IPR019956 -
Gso7g2253 867 SUPERFAMILY Ubiquitin-like 79 167 IPR029071 -
Gso7g2253 867 ProSiteProfiles Ubiquitin domain profile. 79 155 IPR000626 GO:0005515
Gso7g2253 867 Gene3D Hect, E3 ligase catalytic domain 750 866 - -
Gso7g2253 867 Gene3D Hect, E3 ligase catalytic domains 507 732 - -
Gso7g2253 867 Gene3D Hect, E3 ligase catalytic domain 627 709 - -
Gso7g2253 867 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 58 865 - -
Gso7g2253 867 SMART ubq_7 79 151 IPR000626 GO:0005515
Gso7g2253 867 MobiDBLite consensus disorder prediction 1 33 - -
Gso7g2253 867 Pfam HECT-domain (ubiquitin-transferase) 556 859 IPR000569 GO:0004842
Gso7g2253 867 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 58 865 - -
Gso7g2253 867 MobiDBLite consensus disorder prediction 51 70 - -
Gso7g2253 867 ProSiteProfiles HECT domain profile. 527 867 IPR000569 GO:0004842
Gso7g2253 867 SUPERFAMILY Hect, E3 ligase catalytic domain 502 853 IPR035983 GO:0004842
Gso7g2253 867 Gene3D - 71 169 - -
Gso7g2253 867 Pfam Ubiquitin family 82 153 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2253 Gso-Chr7 46147066 46152990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2253 79 153 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.333 5.70e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2253 - - gmx:100789233 1730.3