Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2242 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCCAACGCCAACCAAGGTGGTGGCGTTGATAATTCGGGTTCAGGTGCGGCAGCCCCAACGGCTAACGGTGGGGTGGAGGTGAAGAAGGCGAATGAGCTGAAAGAAGAAGGGAATAGGAGGTTTCAGAATAAGGACTATGCGGGCGCTCTTGAGCAGTACGAGAGTGCTCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCATAGCAACAGGGCTGCGTGTTTGATGCAGATGAAGCCCATTGATTATGAGGCTGTCATTGCCGAGTGCACCATGGCGCTCCAGGTCCAGCCACGCTTTGTCCGGGCACTTCTCCGCCGGGCACGGGCGTTCGAGGCCCTTGGAAAGTATGAAATGTCTGTGCAAGATGTACAGTTCTTGCTGGCAGCTGATCCTAGCAATCGCGACGCATTGGAGATTGCCCAGAGATTGAGGACTGCATTGGGGTCGCGCCAGGAGGCCCAGCAGGACCTCCATAGTCGCCCCTCCCCAGCTGCCCTTGGTGCTTCGGCTGTCCGTGGTGCCCCTATTGCTGGATTAGGGCCTTGTTTGCCGGCTCGGCCTGTGGCAAAGAAGGGAGCGCATTCGGCAGTTGGATCTGTTGTGTCGCCCAATAATAACAAACCAGACAAGTCACAGCCAGTTTTACCAACTGAAAATGGTTCTGACACCAAGTCCCAGTTGCCAAAACTGGTATTGAAGTCTTCAAATGGTTCTGCAAAGCCACCTAACCCTAAAAAGGAAGATCACAAGGAACTGTCATCGACCATTCATGGGCAGCGTTCGGATGTTGCAATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTCAATTGCAATTTTAGAGGACTAAGGGATGTAGTAAGCAAAAGGTTTCCTTCGTCAAGTTCTGTTCTGATCAAGTATAAGGATTGTGATGGTGATTTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAGCCATCTTGTGAAAGAACCTGGGGAAGATAAAAGTGATTCTGTAGCAATGCTGAGACTGCATATTGTTGAAGTCAGTCCAGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGGCATGGGAGAAGAGAATGGATCTCATTCTTCTCTCGGCGAATCTGTCTCTGAAGTAGCTGATACCGTCAAGGTTGATAAGACTGTGAAGGATACTCCAAAGGAAAAGCCAGGAACCACAGGAGATACTGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCTCATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTTGAGGAAACAGTTACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCGGCTTCAAAGTTTCAGGAGGTGGCTGCTTTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGCGCAGCTAGGAAGCGGATTCCCCTGGATGAGTCCGCTGGGCAAGTGGTAGTGGCAGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTAGCAAGAGAGAAGTATGTGGAAGCATTGTCGATCAAACCAGACTTTTATGAGGGACTGTTGGCTCTGGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCTCTTGCTAAGAAGATAGATCTATCAGGCTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAAAAACTGGAGGAACAGAGGGCAAAAGAGCTAAAGGACTCAAATGCAACCAAGAAAGAAGAATTATTGAGAAGAAGAAAGAAACAAGGTGCTACTGAAGGTGAGTCCTCCAGTGTTGGAGGTCAGGGTGAAATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCACAAATTCACCTCTTCTGGGGTAATATGCTTTTCGAAAGATCCCAAGTTGAATGCAAATTAGGAATGACTGGATGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATGTTTCGATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGATGGAGATGATAAAAAGGTTGAGAACCCACAGCACAATAAGACTGTTAAACCAGAGATCAACAAGGCTCATCAAGTATGA 2310 0.4753 MGKSGGRRKKGGSNANQGGGVDNSGSGAAAPTANGGVEVKKANELKEEGNRRFQNKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVIAECTMALQVQPRFVRALLRRARAFEALGKYEMSVQDVQFLLAADPSNRDALEIAQRLRTALGSRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGAHSAVGSVVSPNNNKPDKSQPVLPTENGSDTKSQLPKLVLKSSNGSAKPPNPKKEDHKELSSTIHGQRSDVAIRWRPLKLVYDHDIRLAQMPVNCNFRGLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLVKEPGEDKSDSVAMLRLHIVEVSPEQEPPLLEEEEEKPVENEGGMGEENGSHSSLGESVSEVADTVKVDKTVKDTPKEKPGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGQVVVAEQLQVAYEWVKEKYSLAREKYVEALSIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDSNATKKEELLRRRKKQGATEGESSSVGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMTGWKENLDAATERFKLAGASEADVSMVLKNHCSNGDAKDGDDKKVENPQHNKTVKPEINKAHQV* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2242 769 CDD PB1 286 345 - -
Gso7g2242 769 SUPERFAMILY CAD & PB1 domains 281 353 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 739 769 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 258 272 - -
Gso7g2242 769 SMART tpr_5 116 149 IPR019734 GO:0005515
Gso7g2242 769 SMART tpr_5 42 75 IPR019734 GO:0005515
Gso7g2242 769 SMART tpr_5 80 115 IPR019734 GO:0005515
Gso7g2242 769 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
Gso7g2242 769 MobiDBLite consensus disorder prediction 210 273 - -
Gso7g2242 769 SMART PB1_new 283 375 IPR000270 GO:0005515
Gso7g2242 769 MobiDBLite consensus disorder prediction 16 30 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 738 769 - -
Gso7g2242 769 PANTHER - 1 758 - -
Gso7g2242 769 Coils Coil 610 645 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 416 440 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 632 656 - -
Gso7g2242 769 Gene3D - 285 355 - -
Gso7g2242 769 PANTHER PROTEIN CLMP1 1 758 IPR044517 -
Gso7g2242 769 MobiDBLite consensus disorder prediction 377 440 - -
Gso7g2242 769 Pfam PB1 domain 283 374 IPR000270 GO:0005515
Gso7g2242 769 MobiDBLite consensus disorder prediction 214 257 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 632 670 - -
Gso7g2242 769 ProSiteProfiles PB1 domain profile. 283 375 IPR000270 GO:0005515
Gso7g2242 769 SUPERFAMILY TPR-like 40 173 IPR011990 GO:0005515
Gso7g2242 769 MobiDBLite consensus disorder prediction 1 53 - -
Gso7g2242 769 MobiDBLite consensus disorder prediction 380 394 - -
Gso7g2242 769 Gene3D Tetratricopeptide repeat domain 37 163 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2242 Gso-Chr7 46054955 46058110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2242 39 163 Calmodulin-binding Proteins AT3G25230 28.676 4.15e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2242 - - gmx:100784987 1424.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2242 7 46054955 46058110 Gso17g0079 17 767096 770129 GST