Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2236 ATGGGTGAGGAGGCAATGGAGGGTGTAATTTCTTCTAAAGGGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGTTGGTCATCATCCATTAAATCATCCTATTCTTAATAATCCCAATCCTAATGAACACACAAACACTCTCTTCCTTCCCATGCCTTGTACTAATAATAATCACCACCCGAACCGCAATAACCACAACTCCAACGCCACTGAGTTAGGGTATTTCATGGAGATCCCCAACAACAACAACGATGGAAGCTCCTCTTCCCCTTCTTCAGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCGCCTGAAGTGGTGGGAAGGTTAGAAGAAGCATGTGCATCTGCTGCAGTGATAATGGCAGGTGGAACAGCCAGCATAGGCGAGGATCCAGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTTCTTCAGAGGATCGAGTGCCAGTTCAAATCTCTCACTATTTCTTCTTCTTTGGACACTACTGCGTGTAATGAAGCTATTGATAGGAATGGGCCATCTGAAGATGTTGATGTTCAGACCAACATAATAGATCCGCAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTACGCAAGTACCGTGGATACCTAGGCAGTTTGAAACAGGAATTCACCAAGAAGAGAAAAAAGGGCAAGCTGCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCTCTTGCAGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAAAGGAAGAGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACCCAATGCTCTAA 1089 0.4628 MGEEAMEGVISSKGMGFGENTSSSGVCPMMMMPLVTSHHVGHHPLNHPILNNPNPNEHTNTLFLPMPCTNNNHHPNRNNHNSNATELGYFMEIPNNNNDGSSSSPSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVGRLEEACASAAVIMAGGTASIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSLDTTACNEAIDRNGPSEDVDVQTNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMDLSHPML* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2236 362 SUPERFAMILY Homeodomain-like 266 342 IPR009057 -
Gso7g2236 362 ProSiteProfiles ELK domain profile. 244 264 IPR005539 GO:0003677
Gso7g2236 362 SMART ELK_2 244 265 IPR005539 GO:0003677
Gso7g2236 362 SMART HOX_1 266 331 IPR001356 GO:0003677
Gso7g2236 362 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 351 - -
Gso7g2236 362 CDD homeodomain 276 328 IPR001356 GO:0003677
Gso7g2236 362 Pfam ELK domain 244 264 IPR005539 GO:0003677
Gso7g2236 362 Pfam KNOX1 domain 108 147 IPR005540 GO:0003677|GO:0005634
Gso7g2236 362 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Gso7g2236 362 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677|GO:0006355
Gso7g2236 362 ProSitePatterns 'Homeobox' domain signature. 302 325 IPR017970 GO:0000981|GO:0006355
Gso7g2236 362 Gene3D - 269 331 - -
Gso7g2236 362 PANTHER - 7 351 - -
Gso7g2236 362 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677
Gso7g2236 362 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
Gso7g2236 362 Pfam KNOX2 domain 159 206 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2236 Gso-Chr7 45988494 45993986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2236 109 362 Homeobox Transcription Factor Family AT1G62360 79.389 3.76e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso7g2236 KNOX2 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2236 - - gmx:100127401 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2236 7 45988494 45993986 Gso15g0941 15 8741234 8748798 PCT
Gso7g2236 7 45988494 45993986 Gso9g0058 9 514864 522613 PCT