Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2228 ATGTTTATGGAATGGAGTCTCACTCTTGATTCCTCTCACTCTTCCTCCTCCACCACTAACCACAACATGTTCCCCACTTTAGGATTTCCGGTCAACCTTAGCCCCTCCTCCGATCACAATCGGACGGTCCTCGGTGAAGTTGACTTCTTCTCCGGTGCTAGAAACATCTCATCATCTCACACCAACAACGATCATGGAACCCCCCTTAAGTGTGATCCCCATGTAAATACTGGTTTGCAACTTCTCACCGCTAACGCTGGAAGTGATCAGTCAACCGTGGATGATGGGGCTTCATCGGATGCTGAAGATAAGCTTGTCAAGATCACTGAGCTGGCACGATTGCAAGAGGACCTTCGGCGCATGAATGCAGAGAACCAAAAGCTGAAGGAGATGCTCAGCCATGTCAGCAGTAACTACGCGAACTTGCAAATGCATCTTGCAGCAGTACTGCAACAGCAACATAACCAACGCACTGAGAACACGGAACAAGAGGTTGTTCAAGGAAAAGCTGAGGAGAGAAAGCATGGAGGAATGGTGCCTCCTAGACAATTCCTGGATTTAGTTCCGAGTGGTACGACCGAAATAGATGATCAAGTATCGAATTCTTCTTTGGGTGAAAGGACTCGATCAACCACACCTCCCAGCTGCAATAAAAATGATGATAAGGATAAGAAAGAGACTACTGATATTCCACACTCTGGCAAATTATTGAACCATACGACGGATCCATCCACTAGTCCGGAAGCCGCTATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCACCCATGATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACCATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCGGAGGACAGAACAATTTTGACAACAACGTACGAGGGGACCCATAACCATCCACTGCCACCAGCTGCAATGGCTATGGCATCGACCACTGCAGCTGCTGCTAGCATGTTGTTGTCTGGGTCAATGACCAGTGCTGACGGAATAATGAACCCCAATTTGCTAACTAGAGCTATTCTTCCATGTTCTAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCCACAGTGACATTGGACCTCACACACAACCAAAACGCGTTTCAGAATTACCAAAGACCTCAAACCCCATTGTTCCCATCACAGCCCCAGGACTTTATCGCTGGATCCACGCCACCACAACTGCCGCAACTGATTGCACAAGCGCTCTATAATCAATCCAAATTCTCAGGCCTTCAACTTTCTCAGGATGTGGGGCCTAATAATTCCCAAGCTCCAAGACCGTTTTTGCAGCCAAGCCAACAGGTCTCGCTCACTGACACCATCAGTGCCATCACCGCCGATCCAAACTTCACGGCAGCGCTCGTCTCCGCCATCTCCTCCATCATCGGTGGTGCTAATCCAAACAATAACAGCGCCAACAACAGTAGTAGCAATCCCAATGTCATCAATAGTGCTACAATTAATCAATAG 1554 0.4833 MFMEWSLTLDSSHSSSSTTNHNMFPTLGFPVNLSPSSDHNRTVLGEVDFFSGARNISSSHTNNDHGTPLKCDPHVNTGLQLLTANAGSDQSTVDDGASSDAEDKLVKITELARLQEDLRRMNAENQKLKEMLSHVSSNYANLQMHLAAVLQQQHNQRTENTEQEVVQGKAEERKHGGMVPPRQFLDLVPSGTTEIDDQVSNSSLGERTRSTTPPSCNKNDDKDKKETTDIPHSGKLLNHTTDPSTSPEAAMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILTTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMTSADGIMNPNLLTRAILPCSSMATLSASAPFPTVTLDLTHNQNAFQNYQRPQTPLFPSQPQDFIAGSTPPQLPQLIAQALYNQSKFSGLQLSQDVGPNNSQAPRPFLQPSQQVSLTDTISAITADPNFTAALVSAISSIIGGANPNNNSANNSSSNPNVINSATINQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2228 517 SMART WRKY_cls 267 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso7g2228 517 Gene3D WRKY domain 252 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso7g2228 517 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso7g2228 517 MobiDBLite consensus disorder prediction 153 251 - -
Gso7g2228 517 MobiDBLite consensus disorder prediction 498 517 - -
Gso7g2228 517 PANTHER WRKY TRANSCRIPTION FACTOR 6 32 503 - -
Gso7g2228 517 Coils Coil 111 138 - -
Gso7g2228 517 MobiDBLite consensus disorder prediction 193 215 - -
Gso7g2228 517 MobiDBLite consensus disorder prediction 164 179 - -
Gso7g2228 517 MobiDBLite consensus disorder prediction 216 232 - -
Gso7g2228 517 Pfam WRKY DNA -binding domain 269 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso7g2228 517 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 32 503 IPR044810 GO:0003700
Gso7g2228 517 SUPERFAMILY WRKY DNA-binding domain 260 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso7g2228 517 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2228 Gso-Chr7 45914704 45917995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2228 29 502 WRKY Transcription Factor Family AT1G62300 52.399 2.43e-141 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso7g2228 WRKY 4.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2228 - - gmx:100127382 949.118