Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2199 ATGATGCAGGCTGGACCCGGCGGCATGGCCCAACAAGCGAACCAACAATACGCACAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCCTCAGCCCCCTCAGATGTGGGCCACATCGGCCCAGCCTCCGTCCCAGTCGGTGGCTCCTCCGCAACCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAAAATTATCTCTACACCTGTTTGGCACACACCGGCGAGGTGGCTTCAGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAGTCCTTCAAACATACAATGGCACCATTATGCCAAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACTCTTAGTGCAGGTGAGAGGCGTCACGATGATAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCCGATGTTACGGATTATCTTCTTCAAGAGACATTTCGGGCACGATATCCCTCAATTAAGGGGGCCAAAGTTGTAATTGATAGGCTAACTGGACGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCAGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAACGTCACGGATGACCATTTGAGACAAGTTTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCAGCTGGCAAGCGATGTGGATTTGTCCAATTTGCGGACCGGAGCTGTGCGGAAGAGGCACTGCGGGTTTTGAATGGCACACTTCTAGGCGGACAAAATGTTAGGCTTTCATGGGGGCGAAGTCCTTCAAACAAACAGGCTCAACCAGATGCAAACCAGTGGAATGGTAGTGGTGGTGGATACTACGGATATGCTCAGGGGGGCTATGAAAATTATGGTTATGCCCCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCTGGGTATGCGAATTACCAACCTCCCCAGCAACAGCAGCAAATAGGATATAGCTAA 1194 0.4925 MMQAGPGGMAQQANQQYAQQQQQPYMMMPPQPQPPQMWATSAQPPSQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATLSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGGYYGYAQGGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2199 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Gso7g2199 397 SMART rrm1_1 155 229 IPR000504 GO:0003723
Gso7g2199 397 SMART rrm1_1 62 137 IPR000504 GO:0003723
Gso7g2199 397 SMART rrm1_1 262 329 IPR000504 GO:0003723
Gso7g2199 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Gso7g2199 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Gso7g2199 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 128 IPR000504 GO:0003723
Gso7g2199 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 394 - -
Gso7g2199 397 CDD RRM3_NGR1_NAM8_like 260 331 - -
Gso7g2199 397 MobiDBLite consensus disorder prediction 383 397 - -
Gso7g2199 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 141 IPR000504 GO:0003723
Gso7g2199 397 Gene3D - 240 367 IPR012677 -
Gso7g2199 397 MobiDBLite consensus disorder prediction 377 397 - -
Gso7g2199 397 Gene3D - 145 239 IPR012677 -
Gso7g2199 397 MobiDBLite consensus disorder prediction 228 260 - -
Gso7g2199 397 MobiDBLite consensus disorder prediction 225 260 - -
Gso7g2199 397 CDD RRM1_SECp43_like 62 140 - -
Gso7g2199 397 MobiDBLite consensus disorder prediction 1 56 - -
Gso7g2199 397 CDD RRM2_SECp43_like 153 232 - -
Gso7g2199 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Gso7g2199 397 MobiDBLite consensus disorder prediction 8 26 - -
Gso7g2199 397 Gene3D - 7 144 IPR012677 -
Gso7g2199 397 SUPERFAMILY RNA-binding domain, RBD 245 364 IPR035979 GO:0003676
Gso7g2199 397 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 16 394 - -
Gso7g2199 397 SUPERFAMILY RNA-binding domain, RBD 60 236 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2199 Gso-Chr7 45704413 45708297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2199 260 339 Eukaryotic Initiation Factors Gene Family AT4G34110 34.483 2.13e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2199 - - gmx:100814743 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2199 7 45704413 45708297 Gso17g0118 17 1094612 1098743 GST
Gso7g2199 7 45704413 45708297 Gso15g0899 15 8350397 8354709 PCT
Gso7g2199 7 45704413 45708297 Gso11g2357 11 39577899 39582211 PCT