Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2188 ATGGAGAGCAACACACTCTCACTGTTGTCGCCTCTTGCTACTTTGCGCGTTCTTTCATCTGAAAAGTTAGCTCCTACTAACTGTTACATCCTTCGTTCATACAACCATTTTCTCAAACACTTTTCCTCCTCCACCACTAACCTCAAGCTCGGAACTCCACAGGCCATTCTAAATACTTCTCCTATAGCCCCTTCAGAGGTCACCACTCCCACTCTCAGAGAATTATGCCAATCGCATGTTCCCGAACATATACTGCAAAGGATGGAAGAGATTGGTTATGTAATGCCTACAGATATCCAGAGGGAAGCACTGCCTTACCTTTTTTCCGGGCTTGACTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATCCATTCCATCATCAATGCTGCAAAATCTTCCGTGCAAGCCCTAGTTCTGGTACCCACCCGGGAACTTGGCATGCAAGTCACCAAGGTTGCTAGGACATTGGCTGCAAAGCCAACTGGAGTTGATGGGGAGCAGAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTGAAAAGACACAAGACTTGGTTAAAGGCAGAGCCTCCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATTTTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGATTCTGTGCAGCAGAAATGGACAAAGAGAGACGTGGTACATATTCATGTCAGTGCAGTGGAGCCTATGCCATCTCGCCTATATCATAGATTTGTAATATGTGATACCAAAAGAAAATTACATACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAAGGCTCCATCAACATCCCTTCTGATTGATTTTTTGAAGACATCATACCAAGGTGATTTAGATATCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCCCTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTGGCAACAGATATAGCTGCTAGGGGATTTGACCTTCCAGAAATGTCTCACATTTACAATTTTGATCTACCAAGGACTGCCATAGATTATCTTCATCGAGCAGGGCGAACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTGTTCCATAA 1419 0.4278 MESNTLSLLSPLATLRVLSSEKLAPTNCYILRSYNHFLKHFSSSTTNLKLGTPQAILNTSPIAPSEVTTPTLRELCQSHVPEHILQRMEEIGYVMPTDIQREALPYLFSGLDCILHAQTGSGKTLTYLLLIHSIINAAKSSVQALVLVPTRELGMQVTKVARTLAAKPTGVDGEQKSCSIMALLDGGTLKRHKTWLKAEPPTIVVATVGSLCQMLERHFFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFVICDTKRKLHTLLSLIQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGFDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFNCEELVP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2188 472 CDD DEADc 84 270 - -
Gso7g2188 472 Gene3D - 300 471 IPR027417 -
Gso7g2188 472 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 471 - -
Gso7g2188 472 CDD SF2_C_DEAD 305 434 - -
Gso7g2188 472 Pfam DEAD/DEAH box helicase 97 270 IPR011545 GO:0003676|GO:0005524
Gso7g2188 472 SMART helicmild6 352 436 IPR001650 -
Gso7g2188 472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 472 IPR001650 -
Gso7g2188 472 SMART ultradead3 92 307 IPR014001 -
Gso7g2188 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 286 IPR014001 -
Gso7g2188 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 42 471 - -
Gso7g2188 472 Gene3D - 65 288 IPR027417 -
Gso7g2188 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 438 IPR027417 -
Gso7g2188 472 Pfam Helicase conserved C-terminal domain 315 434 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2188 Gso-Chr7 45615414 45620726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2188 74 461 Eukaryotic Initiation Factors Gene Family AT1G72730 28.463 5.65e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2188 - - gmx:100786205 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2188 7 45615414 45620726 Gso15g0999 15 9297280 9298572 PCT
Gso7g2188 7 45615414 45620726 Gso9g0118 9 1030725 1031863 PCT