Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2187 ATGGCGAATTTCACCTCTTCTTCTCCCTTACCTCTAACTCTAACTATGTCACACATTTCAACTCCGTCATCTTCTGCGGCTTTCGACGACAGTTCCGAGGATGCCTGCAGCATATGTCTAGAGCCATTCAGCACCCATGACCCTGCCACCATTACCAGTTGCAAACATGAATATCATCTGCACTGTATTCTTGAATGGTCGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAAATGCAGTGGAAGCTGAAAAACGCTTAAGTTCAAGAACTGTATATTCACATGCATTCACTGATTCTCGTAGTCCCCTTCATCGGCTTAACAATGACCAAGATGATTCTGATTTTGATGAACAACTTACGCAGCACCTAGTTTCTGCTGCAAGTAGAGCTCGTTATATCTGCAGAGGGGAAAGGCAGAGATCCCCTGGAGCAGGTCCTTCAGAGGTTCTTGTTTTTAACTCTTCTATGCATGCGTCAGGGATGCAATCAACACTTACAACTTCACCATCTTCTGGTGTGCCTTCAACATCTGCTTTTTCCTCTGTTGGCATGGTTACAACAAATACTTCTTCTGAGAGTGACATGCCTTGCAAACCCAGAGTTATTTATAGCCAGCCATCACCGGAGAATGCAAGGAGACTAAACACTTCTGAGATATTCTCCTTCCCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCCAGATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAAGAGAAGTTGATTGCACGTAATGCCTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGTGTTGCAAGGATGGTTGAACGCCTTGATCTCACCTCGAAACGGTCCTCGTCTCCTCTCATTCCTGTAAAAGGGAAGTCTGTCCAAGAGAATGGTGTTGAGCAGTTTCCTAATAAAGAGGAGAGTGGAGTTTTGGTTGCTGATGTTACATCTAATGCTGCCTCACTCGATTCTAGCTTGGTTGCTGTTGGAGTAGAAATTCCTCCTTCATGTGTTCAGAGTGGACATGATGCTGTGATGACTTAG 1113 0.4447 MANFTSSSPLPLTLTMSHISTPSSSAAFDDSSEDACSICLEPFSTHDPATITSCKHEYHLHCILEWSQRSKECPICWQLLILKDPASQELLNAVEAEKRLSSRTVYSHAFTDSRSPLHRLNNDQDDSDFDEQLTQHLVSAASRARYICRGERQRSPGAGPSEVLVFNSSMHASGMQSTLTTSPSSGVPSTSAFSSVGMVTTNTSSESDMPCKPRVIYSQPSPENARRLNTSEIFSFPESFKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQREMNAGIAGVARMVERLDLTSKRSSSPLIPVKGKSVQENGVEQFPNKEESGVLVADVTSNAASLDSSLVAVGVEIPPSCVQSGHDAVMT* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2187 370 MobiDBLite consensus disorder prediction 200 223 - -
Gso7g2187 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 80 IPR013083 -
Gso7g2187 370 SMART ring_2 36 76 IPR001841 -
Gso7g2187 370 Pfam Ring finger domain 35 76 IPR001841 -
Gso7g2187 370 SUPERFAMILY RING/U-box 29 83 - -
Gso7g2187 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 344 - -
Gso7g2187 370 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Gso7g2187 370 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2187 Gso-Chr7 45610055 45613105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2187 30 84 C3H Transcription Factor Family AT4G00335 45.455 2.39e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2187 K19043 - gmx:100785684 696.812