Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2177 ATGGGAATTTCATGGAGTAATAGTAACAGTAACAGAAGAAGAAGAAGAATAAATACTTACTTTCACCCTCCACATCTTCCACCCCCATACTATTACCATCCCCCGCCACCGCCACCGCCACCGCCACAAGGTTACTTTATTGCCTCAACCAACCCTTATGCTTCCACCACAGGCTACGTGGGTCCTCCTCCTACTCAGTATTACCCAAATGGTGTCAATTCTGTGATGCTTCATCAGCAGCCCTTAGCAAGTGGAATTCTTGCTTCGCCACCACCCTATGTTGATCATCAAGCTACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACTCTGCGCCTCCACCTTGATCCTAACAATTCAGATCACCACTTGATTTCCTTTGATTTCGATGCCCTCTATGATGGCAGCATTACAATTTTCTACTTGGCCAAAGAAGAAGAAAAATGTAGGTTTATTCCACTATTTCCTGATGTGTTCGAGCCAATCACATTCCCCTTTCAAAAAGGAGCTGGCCAGAAATTTTGTCAGCCTTCTGGAACAGGCATTGACCTAGGTTTTTTTGAGTTGGATGATCTTTCTCTGCCCTCACCCGAAGAAGATGTGTTTCCCCTGGTTATATGTGCTGAAACTACTAGTAATTCCGTAATAGATGCATCTCCTCACATGCAAATTACTCAAGCTGTCTTAGAGAAAAGCAATGGTATTGGTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATATTCGTTATGAGCTGAGAGAGTTATATGGAATAGGAAGTTCAACAGTAGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCCTGCCGACATATGTGTATGTGCGGTGATTGTGCCAAAGCTTTGCGGCTTCAATCAAATAAATGCCCTATATGTCGTCAACCAATTGAGGAACTAATAGAGATCAAGATAAACAATGGCAACGAGTGA 1011 0.4273 MGISWSNSNSNRRRRRINTYFHPPHLPPPYYYHPPPPPPPPPQGYFIASTNPYASTTGYVGPPPTQYYPNGVNSVMLHQQPLASGILASPPPYVDHQATKKIRNDVNLHKHTLRLHLDPNNSDHHLISFDFDALYDGSITIFYLAKEEEKCRFIPLFPDVFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSLPSPEEDVFPLVICAETTSNSVIDASPHMQITQAVLEKSNGIGPFQVKVVRQILWIDDIRYELRELYGIGSSTVADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGDCAKALRLQSNKCPICRQPIEELIEIKINNGNE* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2177 336 PANTHER MAHOGUNIN 1 335 IPR045194 GO:0061630
Gso7g2177 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 330 IPR013083 -
Gso7g2177 336 ProSiteProfiles Zinc finger RING-type profile. 281 320 IPR001841 -
Gso7g2177 336 Pfam Zinc finger, C3HC4 type (RING finger) 279 325 - -
Gso7g2177 336 SMART ring_2 281 319 IPR001841 -
Gso7g2177 336 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 335 - -
Gso7g2177 336 SUPERFAMILY RING/U-box 280 326 - -
Gso7g2177 336 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 280 320 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2177 Gso-Chr7 45521403 45523492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2177 93 336 C3H Transcription Factor Family AT3G06140 64.113 9.61e-107 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2177 - - gmx:102665712 651.358