Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2171 ATGATGAACATGCTTTCGGTGTCAGCAGCGCTGTGCAAGCCCGTAGCGAGTTTCAACCCGGCATCACATTCACTGAGGAATATGAACTCGCTGTCCCTCTTCATGAACAAGAAGGAAAAAGTAGTGGTAATCATGGGCGCAACGGGGACAGGAAAGTCAAAACTGGCCATAGAGTTGGCCACGCAATTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGCCTAAACATCACCACAAACAAAGTCACCGAAGAAGAGCGTCGCGGGGTCCCACACCATCTCCTAGGCACGGTGAATCCCAACACCAGTTTCACTGCACAAGACTTTTGCGACCAGGCCACTCTCGCCGTTGGGTCCATATTGGGCCGTGACGGTTTACCCATCATTGCGGGTGGGTCCAACTCCTTCCTCGACGCGTTGGTCAACCATCACACCGAGTTTCGGTTACGCTACGACTGCTGCTTCCTCTGGGTCGATGTCTCACTCCCCGTCCTCCATTCCTCTCTCTCCGCACGTGTGGATCGCATGATCCACTCTGGCCAGCTCCACGAGGTTCGACAGAGTTTTCAATACCACAACCAGGATTATACCTTAGGGATACGAAAGGCCATTGGCGTACCCGAGTTTCATGATTTTTTCAGAGCCGAAGCCGACGGAGCCGATCAGAGGACCAAACAGCGCCTCCTCCAGGCTGCCATTGCTTCCCTCAAAACCAACAACTGCACCCTCGCCAAGCGGCAGCTCCAGAAGATTCACCGCCTTTATAGCATGTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCAAGACCACTCGCCAGGAGGCAGAGGAGGCCTGGGAGGATCACGTCTTGTCCAAGACCAGAAGGATTCTCCATAAGTTCCTGTATGAGGACACGCATGTTGTTCCCGCAGGTATTGCGTCTGTTGTTATTGCTTCTTCGCCGCCGCCCATGCCTGCCACCGCCGCCGCCGCAACTCACTAG 1011 0.546 MMNMLSVSAALCKPVASFNPASHSLRNMNSLSLFMNKKEKVVVIMGATGTGKSKLAIELATQFPPAEIVNSDKMQVYEGLNITTNKVTEEERRGVPHHLLGTVNPNTSFTAQDFCDQATLAVGSILGRDGLPIIAGGSNSFLDALVNHHTEFRLRYDCCFLWVDVSLPVLHSSLSARVDRMIHSGQLHEVRQSFQYHNQDYTLGIRKAIGVPEFHDFFRAEADGADQRTKQRLLQAAIASLKTNNCTLAKRQLQKIHRLYSMWKRNMHRLDATEVFLKTTRQEAEEAWEDHVLSKTRRILHKFLYEDTHVVPAGIASVVIASSPPPMPATAAAATH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2171 336 Gene3D - 38 304 IPR027417 -
Gso7g2171 336 CDD NK 41 92 - -
Gso7g2171 336 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 32 310 IPR039657 -
Gso7g2171 336 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 267 - -
Gso7g2171 336 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 32 310 - -
Gso7g2171 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 200 IPR027417 -
Gso7g2171 336 Pfam IPP transferase 75 149 - -
Gso7g2171 336 Pfam IPP transferase 153 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2171 Gso-Chr7 45471455 45473481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2171 155 308 C2H2 Transcription Factor Family AT2G27760 30.000 2.54e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2171 K10760 - gmx:100782474 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2171 7 45471455 45473481 Gso17g0140 17 1303137 1305119 GST
Gso7g2171 7 45471455 45473481 Gso15g0874 15 8083251 8085423 PCT
Gso7g2171 7 45471455 45473481 Gso11g2389 11 39901250 39903214 PCT
Gso15g0874 15 8083251 8085423 Gso7g2171 7 45471455 45473481 PCT
Gso11g2389 11 39901250 39903214 Gso7g2171 7 45471455 45473481 PCT