Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2131 ATGGAGCAAAGTTGGTGGGCCAATATGCCTCGCGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCACGTGGCCGTCGCGGAGGAGCGTGGTGGCTTGTGGCGGAGTGTGTCGCACCTGGAGGCTCATTGTCAAGGAGATTGTCAAGCCTCCTCAACTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCGAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGCCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAATAGCTGATGATGGGAAGTTCCTTCTTGCTGCACGCAAGTTCAGACGCCCTACCTGCATAGATTATATTATCTCCCTAGATGCAGATGATATGTCCAGAGAAAGCAATGCCTATGTTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTTACAATCTACGATATCCCGCTGCCTCATGTTGGGGCAAAGATGACAAAAAGTTGCTTCACTAAGCTGGTGAATCCAAAACAAGTTTCACCTAGGGTCCCTACAGGCAACTATCCAGTTGCTCACATCTCATATGAACTGAATGTACTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATGGATACCATTCCTGCTTCTGCTATTGAACCAGGAGGGGCAGCCGTAGCCCCTTCACAGACTGATTTTTCTGTTAGTAACATAGATACTTCATTCCCATTTTTTCAGACAAACTCAACTAGTCTGGAAAACTCCATATCTGGAGACCAGAGAAATAAAAAAGATGATGTGCTAGTGTTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGGAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCGGTTAAAAACTTTCAGCTGGCTGTTTCACCAGAAAATGGACATGCTGGACCACAAGAGGATGAGGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAAGCATTTGCAATCTGCCTCAGCAGTTTCGCTACCACAGTTGCTTGCGAATGA 1080 0.4685 MEQSWWANMPRELLREVLLRIESSEATWPSRRSVVACGGVCRTWRLIVKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSATQTYYLFLSLSSALIADDGKFLLAARKFRRPTCIDYIISLDADDMSRESNAYVGKLRSNFLGTKFTIYDIPLPHVGAKMTKSCFTKLVNPKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASAIEPGGAAVAPSQTDFSVSNIDTSFPFFQTNSTSLENSISGDQRNKKDDVLVLRNKAARWHEQLECWCLNFHGRVTIASVKNFQLAVSPENGHAGPQEDEVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2131 359 Gene3D Tubby Protein; Chain A 64 359 IPR025659 -
Gso7g2131 359 SUPERFAMILY F-box domain 3 49 IPR036047 GO:0005515
Gso7g2131 359 PRINTS Tubby superfamily signature 122 138 IPR000007 -
Gso7g2131 359 PRINTS Tubby superfamily signature 138 162 IPR000007 -
Gso7g2131 359 PRINTS Tubby superfamily signature 187 214 IPR000007 -
Gso7g2131 359 PRINTS Tubby superfamily signature 271 288 IPR000007 -
Gso7g2131 359 PRINTS Tubby superfamily signature 289 305 IPR000007 -
Gso7g2131 359 PRINTS Tubby superfamily signature 316 335 IPR000007 -
Gso7g2131 359 PRINTS Tubby superfamily signature 337 359 IPR000007 -
Gso7g2131 359 PANTHER TUBBY-RELATED 1 359 - -
Gso7g2131 359 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 359 - -
Gso7g2131 359 ProSitePatterns Tub family signature 1. 289 302 IPR018066 -
Gso7g2131 359 Pfam Tub family 67 354 IPR000007 -
Gso7g2131 359 SUPERFAMILY Tubby C-terminal domain-like 55 359 IPR025659 -
Gso7g2131 359 Pfam F-box domain 6 52 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2131 Gso-Chr7 45128971 45131545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2131 1 359 TUB Transcription Factor Family AT2G47900 66.667 6.94e-178 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso7g2131 Tub 1.8e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2131 K19600 - gmx:100794141 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2131 7 45128971 45131545 Gso17g0176 17 1654755 1657145 GST
Gso7g2131 7 45128971 45131545 Gso15g0829 15 7618704 7623935 PCT
Gso7g2131 7 45128971 45131545 Gso11g2442 11 40443175 40448488 PCT
Gso15g0829 15 7618704 7623935 Gso7g2131 7 45128971 45131545 PCT
Gso11g2442 11 40443175 40448488 Gso7g2131 7 45128971 45131545 PCT