Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2130 ATGGGTTGTGTGTTTGGGAAAGAAGCATCAAAGAGGAAAGAGGAAGTGGAATTTGCAAGAGCAGAAGAGGGTGTGGTTCAGAACTGTGGGAATGTGAAGGAGGGTGGAGAAGAGGAGAAGAGCAAGCGCCCCAAAGGGGAGAGAAGGCGATCTTCGAAGCTGAAGCCGAATCCGAGGTTGAGCAATCCACCTAACCATGTACATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATTAATGGATTGGTCCCTAGAAGAGCTGACACTTTTGAGAAGCTTAAAAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCCAAGGATACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGATTTGACAACTTAGAGCCTGAGAGTGTGAAATTCATGGCTAGAGAGATTCTTATTCTGCGCCATCTGGATCATCCCAATGTTGTCAAACTTGAAGGTTTGGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTCTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACGAGCCCCACAATTAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGATTGGAACACTGTCACAACCGGCATGTGCTGCATCGTGATATAAAGGGGTCAAATCTTCTCATTGACAGTGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAACGCCCTATGACCAGCAGGGTGGTTACTTTATGGTATCGACCTCCAGAACTTCTCCTTGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCAATTATGCCCGGTCGAACCGAGGTGGAGCAGCTTCATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAAGAAATCAAAGTTGCCACATGCTACCATTTTTAAGCCCCAACAATCATACAAACGGTGCATAGCAGAGACATTTAAGAATTTCCCAGCATCATCCCTGCCACTAATTGAGACCCTTCTCGCAATCGACCCAGCTGAACGTCAAACTGCTGCAGCTGCTTTGCATAGTGAATTCTTTACATCAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGATCGAGAGCTGCAGGCAAAGCTAATGCTGCTGGTGTCAAGAAATCACGTCCACGAGATCGAAGTGGAAGGGGAATTCCAGTTCCAGATTCAAATGCTGAGATGCAAGCAAATATTGATAGATGGCGACTGGTAACACATGCAAATGCTAAGAGCAAGAGCGAGAAGTTTCCTCCTCCTCATGAAGATGGAACTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAATTTTCGATCCACCTGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAAACAAATTTCCAGACCTGGTCTGGCCCATTGGTGGAAACTAGTGTGGATGCACCAAGGAGAAAGAAGAACATGGCAGGGAATGGGCACAGACAATCAAAGAAGGACTCTTATAGATAG 1647 0.4529 MGCVFGKEASKRKEEVEFARAEEGVVQNCGNVKEGGEEEKSKRPKGERRRSSKLKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLKKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGILRIADFGLASFFDPNHKRPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETFKNFPASSLPLIETLLAIDPAERQTAAAALHSEFFTSKPYACEPSSLPKYPPSKEMDTKLRDEEARRSRAAGKANAAGVKKSRPRDRSGRGIPVPDSNAEMQANIDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSHHMDPIFDPPDVPFSSTNLSYPKTNFQTWSGPLVETSVDAPRRKKNMAGNGHRQSKKDSYR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2130 548 MobiDBLite consensus disorder prediction 500 521 - -
Gso7g2130 548 MobiDBLite consensus disorder prediction 28 68 - -
Gso7g2130 548 PANTHER CYCLIN-DEPENDENT KINASE 43 533 - -
Gso7g2130 548 MobiDBLite consensus disorder prediction 402 418 - -
Gso7g2130 548 Gene3D Phosphorylase Kinase; domain 1 87 181 - -
Gso7g2130 548 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Gso7g2130 548 SUPERFAMILY Protein kinase-like (PK-like) 94 388 IPR011009 -
Gso7g2130 548 Gene3D Transferase(Phosphotransferase) domain 1 182 423 - -
Gso7g2130 548 MobiDBLite consensus disorder prediction 525 548 - -
Gso7g2130 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gso7g2130 548 ProSiteProfiles Protein kinase domain profile. 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2130 548 CDD STKc_CDK9_like 99 383 - -
Gso7g2130 548 MobiDBLite consensus disorder prediction 393 449 - -
Gso7g2130 548 SMART serkin_6 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2130 548 MobiDBLite consensus disorder prediction 464 548 - -
Gso7g2130 548 Pfam Protein kinase domain 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2130 548 PANTHER CELL DIVISION PROTEIN KINASE 43 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2130 Gso-Chr7 45123327 45128178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2130 94 421 Core Cell Cycle Gene Families AT5G10270 51.744 1.21e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso7g2130 Pkinase 5.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2130 K08819 - gmx:100814207 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2130 7 45123327 45128178 Gso17g0177 17 1657889 1662783 GST
Gso7g2130 7 45123327 45128178 Gso15g0827 15 7598075 7603059 PCT
Gso7g2130 7 45123327 45128178 Gso11g2445 11 40461966 40466856 PCT
Gso15g0827 15 7598075 7603059 Gso7g2130 7 45123327 45128178 PCT
Gso11g2445 11 40461966 40466856 Gso7g2130 7 45123327 45128178 PCT