Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2126 ATGCAAGGCCACACTGAAACTAACTCTATCATGGCACCACTCTCTCAAATCCCACCTTCTTCTTCTTCTCTTCACCTTTCAACCGATGCTGAAACGGGTAACACAACCACCCCCAGAAAGCGTGTTAAGAAAATGGACTACACCAATTGCGAGAGCCTCAACGTGGAACGTGAAAGAAGGTCGAAGATGACTCAAATGTTCACTCAGCTTCAAACCACTGTCCCTGGTGTCTTACCTCAGGCTACAAGGGAAGTGATTATAAACGAGACAATTAAGTACATTAAGGAGCTTGAGAAGAAGAAGCAAAAGCTGGAGGAGTTGAAGGAGTCAATGAAAGGAGTAGAAGGGTCGATATTGCTTGCATGTGGTAACAACATGAATTGCTCCGTCACGGTTACTGTCTCTGCTAATGTTGCATTCTTTGGTATTCAATCCCTGCCTCGACCCGGTTTGGTTACGGTAATCATGAAGGTGTTCTGCAAGCACCGAGCTGAGGTTTTGGCCGCAAATGTCTCACTTAATAATGGGAAATTCATATTGGCAATCACTGCGACGGTGCAAAATGTTGTCGTTGAAAATATCAAAAGAGAAATAATGAGTTTGTAG 606 0.4389 MQGHTETNSIMAPLSQIPPSSSSLHLSTDAETGNTTTPRKRVKKMDYTNCESLNVERERRSKMTQMFTQLQTTVPGVLPQATREVIINETIKYIKELEKKKQKLEELKESMKGVEGSILLACGNNMNCSVTVTVSANVAFFGIQSLPRPGLVTVIMKVFCKHRAEVLAANVSLNNGKFILAITATVQNVVVENIKREIMSL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2126 201 MobiDBLite consensus disorder prediction 1 35 - -
Gso7g2126 201 Coils Coil 87 117 - -
Gso7g2126 201 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Gso7g2126 201 Gene3D - 38 119 IPR036638 GO:0046983
Gso7g2126 201 SMART finulus 53 103 IPR011598 GO:0046983
Gso7g2126 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Gso7g2126 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 112 IPR036638 GO:0046983
Gso7g2126 201 MobiDBLite consensus disorder prediction 1 43 - -
Gso7g2126 201 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 200 - -
Gso7g2126 201 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2126 Gso-Chr7 45097528 45098693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2126 18 105 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.737 6.60e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g2126 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2126 - - gmx:102670256 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2126 7 45097528 45098693 Gso17g0181 17 1687672 1689132 GST