Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2124 ATGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAATCATTACCGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGACGCTGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGTGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGA 804 0.4266 MEGSVNERLDFGKMGYGCNHYRRRCRIRAPCCNEIYSCRHCHNDAASLLKNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYVEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPEDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRAVAPPVLPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2124 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Gso7g2124 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gso7g2124 267 SUPERFAMILY RING/U-box 152 202 - -
Gso7g2124 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Gso7g2124 267 Pfam Ring finger domain 152 195 IPR001841 -
Gso7g2124 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Gso7g2124 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Gso7g2124 267 Gene3D - 227 262 - -
Gso7g2124 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Gso7g2124 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gso7g2124 267 PANTHER BNAC09G39170D PROTEIN 1 267 - -
Gso7g2124 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 226 IPR013083 -
Gso7g2124 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Gso7g2124 267 SMART ring_2 153 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2124 Gso-Chr7 45086067 45089443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2124 2 266 C2H2 Transcription Factor Family AT3G18290 39.286 2.27e-56 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2124 7 45086067 45089443 Gso17g0183 17 1696891 1700348 GST
Gso7g2124 7 45086067 45089443 Gso15g0821 15 7546751 7550505 PCT
Gso7g2124 7 45086067 45089443 Gso11g2450 11 40501907 40506025 PCT
Gso15g0821 15 7546751 7550505 Gso7g2124 7 45086067 45089443 PCT
Gso11g2450 11 40501907 40506025 Gso7g2124 7 45086067 45089443 PCT