Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2115 ATGTCAACCTCGAGAACCTCATCAGATACACCCTTCAAAGGATATGATCCTAGCCAAACTCAAATGTGTCTCTCTCTCCTCCAACGCAACACTTCTCCTTGTGGTGAGAGGAGGGGCAGAAGGAAGCAAGCAGAACCAGGGAGGTTCCTTGGTGTGAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGAGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCTAGAACCAACTTTGTTTACTCTGATAACATCAACTTCCACACTCTCCAGCTTTCTCCTATGAATGTTCAAGTTCAACCTCTCTTGCCAGCTTCACAGTTCCTCACTACCACCACCACTCAGACCAACCAAAATAGCCACTTTCAGGTTATTCACAGTACTCCAAACTGTGGAAACCCCTCCCCATTGAACAATGACATGTGTGTTGAAACCACATATGGGTCAGCTCAGGATGATAATTTCTTCTTTTCCAGTGATTCTAACTCGGGCTATCTCGAATGCATAGTTCCTGATGATTGCTTCAGACCTGCTTCATCCAGTTCCAACAGTTCAAACTCCAGAAAGAGCAACGTGAGTGATCAAAAGGCTAACACAAGCTCCATGGAGAGTACTAATCACCATCATCATCAGTACTCACATGTTGACATGACTTCATTCTCTCAAGAAGGCATTGAAATGGCACCAAGGGCATCTTATAACTTTTCAGATTTTTGTTATCAAAGTGAAGTGAGTCAAGGATCATGGGATGATCAGCAGTCATGGGATTGGAATAGCAGTGAACTTTCAGCTATATTTAAGAACCCAATGAGGGTGGAAAATGGGTGCATGGATGCATTATGCCCCATAAATGATAGTCCTAGTTCAAGCTATGGGCTAATGAATGAGGCTGCTTCTTCTTCTACAACCTGTTCTCCGTCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1041 0.4524 MSTSRTSSDTPFKGYDPSQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLQLSPMNVQVQPLLPASQFLTTTTTQTNQNSHFQVIHSTPNCGNPSPLNNDMCVETTYGSAQDDNFFFSSDSNSGYLECIVPDDCFRPASSSSNSSNSRKSNVSDQKANTSSMESTNHHHHQYSHVDMTSFSQEGIEMAPRASYNFSDFCYQSEVSQGSWDDQQSWDWNSSELSAIFKNPMRVENGCMDALCPINDSPSSSYGLMNEAASSSTTCSPSLPPFGDVDLGYPLF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2115 346 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gso7g2115 346 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Gso7g2115 346 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Gso7g2115 346 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 346 - -
Gso7g2115 346 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Gso7g2115 346 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Gso7g2115 346 MobiDBLite consensus disorder prediction 204 235 - -
Gso7g2115 346 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Gso7g2115 346 MobiDBLite consensus disorder prediction 204 231 - -
Gso7g2115 346 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 346 - -
Gso7g2115 346 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Gso7g2115 346 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2115 Gso-Chr7 45015375 45016814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2115 1 226 AP2-EREBP Transcription Factor Family AT5G18560 44.086 7.88e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso7g2115 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2115 - - gmx:100812047 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2115 7 45015375 45016814 Gso17g0190 17 1768217 1769748 GST
Gso7g2115 7 45015375 45016814 Gso15g0810 15 7448978 7450056 PCT
Gso7g2115 7 45015375 45016814 Gso11g2459 11 40597159 40598542 PCT
Gso15g0810 15 7448978 7450056 Gso7g2115 7 45015375 45016814 PCT
Gso11g2459 11 40597159 40598542 Gso7g2115 7 45015375 45016814 PCT