Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2114 ATGGAGCGGTACGGGCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGCCGACGTCGACGCCGGCCTCGAAGAGTCGTCGTGGCAACTCGGATTACCCGGTGCTGAATCTTACCCTATGCGTCCCGATGAGGCGGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGATTCAACCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCGCCGAGGACTGGAGGAGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAATTTGGTGCGTCCTGCAAGTACCACCATCCTAGGCAGGTGCCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATACCCATTGCGAGTGGGTCAGAAAGAGTGTTCCTATTACGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCAGGCGTCCAAGTTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACATCCCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGGCCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTACCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTCTACTTCCATCCAGCACTACATCTAATGTTGGTTCTACACAGCTTTATGGGATAACCCAGCTACCTTCATCAGCAGCTACTTATACTGGACCTTATCAACCTTCTGGTTCTTCAATTGGTCCTTCAGGTGCTAGTCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGACTGTAAATTTGGCCCGTTGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAAATGTAACCCTTAGTCCCGTGGGTCTTCCATTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCTTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCTGTCATCTTTGTCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCGAGAATGTCTTCAATGAGCACATCGACTGGATCGGTTGGCTTGACCTTGTCAAGCGTTGGTCCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCGGAAACTACCAGTGCTACCACAAGTAGCACTGTATCTCACACCTCAAGCTAA 1455 0.5113 MERYGRASEGSQSDPSPEWTVAADVDAGLEESSWQLGLPGAESYPMRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAPRTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQVPGTATPVPLNYYGYPLRVGQKECSYYVKTGQCKFGATCKFHHPQPAGVQVLAPSPVPPVSPLPVPVPSPMYPTVHPPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPTMVPFSGWSPYQAPATNPLLPSSTTSNVGSTQLYGITQLPSSAATYTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHHYMKTGDCKFGPLCRYHHPPDKSAPKANVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLALSSLSSELRPELGAGSNKESVASRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSPETTSATTSSTVSHTSS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2114 484 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gso7g2114 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 467 - -
Gso7g2114 484 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gso7g2114 484 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Gso7g2114 484 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Gso7g2114 484 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Gso7g2114 484 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Gso7g2114 484 Gene3D - 46 122 - -
Gso7g2114 484 SUPERFAMILY CCCH zinc finger 140 167 IPR036855 GO:0046872
Gso7g2114 484 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Gso7g2114 484 Gene3D - 294 380 - -
Gso7g2114 484 MobiDBLite consensus disorder prediction 418 484 - -
Gso7g2114 484 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Gso7g2114 484 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Gso7g2114 484 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Gso7g2114 484 MobiDBLite consensus disorder prediction 427 484 - -
Gso7g2114 484 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gso7g2114 484 Gene3D - 126 176 - -
Gso7g2114 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 332 IPR000571 GO:0046872
Gso7g2114 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Gso7g2114 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Gso7g2114 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gso7g2114 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Gso7g2114 484 MobiDBLite consensus disorder prediction 278 295 - -
Gso7g2114 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 467 - -
Gso7g2114 484 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Gso7g2114 484 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Gso7g2114 484 SUPERFAMILY CCCH zinc finger 48 76 IPR036855 GO:0046872
Gso7g2114 484 MobiDBLite consensus disorder prediction 278 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2114 Gso-Chr7 45005321 45010485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2114 1 440 C2H2 Transcription Factor Family AT5G18550 55.628 1.05e-150 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso7g2114 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2114 - - gmx:100789405 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2114 7 45005321 45010485 Gso17g0191 17 1772952 1778252 GST
Gso7g2114 7 45005321 45010485 Gso15g0809 15 7439480 7446782 PCT
Gso7g2114 7 45005321 45010485 Gso11g2460 11 40600689 40607925 PCT
Gso15g0809 15 7439480 7446782 Gso7g2114 7 45005321 45010485 PCT
Gso11g2460 11 40600689 40607925 Gso7g2114 7 45005321 45010485 PCT