Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2111 ATGTTCAGTCCAAGCATGGATTCTGCAAGGGATGCGAGTGGTGTGGCAGGGACCGTGCTCATTCCCATGCGGTTTGTGTGGCCATACGGAGGAAGAAGTGTGTATCTAAGTGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAAGGTTGCCCAACTGTGTTTCAAGTTATTCATAGCTTGATCCCTGGTCATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGACCATCAACCTTGTGTATCTGGAGAATATGGGATAGTTAACACTGTTTTATTGGCTACTGATCCTAATATTGTACCTGTTTTAACTCCAGAAATAGTTTCTGGATCTAACATGGATGTGGACAATGAGGCTTTTCGATGCATGGTCCGATTGACAGACAGTACATTAAATAATGTGTTATTACCAAGAATATCAGATGTTGATATACAGACCTCTCGTCAGCGTATTTCTGCATTCCTATCTATGAGTACAGCATATGAATTACTTCCCGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTGCCTGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTCCCGTCGCTCCTCTTTGGGACATCTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCCTTGGATTTTATTTTAATTATAAGAGAGCTCGGAAATCATGGGTCCAATCTAACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGGAGGAAAGTGGACAGGATTTACACAATGTTTTATCCGTGCAGGGCCATATGATAATTTGAAAGAGATTGCTGTGAAGATCCTGCAAAATGGAATTTCAACAGTTCCTATTATTCATTCAGAAGATGGTTCATTTCCACAGCTACTACATCTTGCTTCACTTTCAGGAATCCTTAAATGTATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTACCTATACTTCAACTTCCAATTTGTGCAATCCCTGTGGGGACGTGGGTGCCCAAAATTGGGGAATCAAATCGCCGGCCTCTAGCAATGTTGAGACCAAATGCTTCACTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAGTGACTCATTACTGGATATATATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAACTTACACACATATTAATCTTGATGAAATGACTGTTCATCAGGCATTGCAATTGGGCCAGGATTCTTACAATACTTACGAGCTGAGAAGTCAAAGATGTCAGATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAACGTTTGGCAAATCCAGGTGTGAGGCGGCTTGTAATTGTGGAAGCTGGCAGCAAGCGCGTAGAAGGCATCATAGCATTGAGTGACATATTCAACTTCTTCCTTGGTTATAACAGTTAG 1449 0.4148 MFSPSMDSARDASGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLIPGHHQYKFFVDGEWRHDDHQPCVSGEYGIVNTVLLATDPNIVPVLTPEIVSGSNMDVDNEAFRCMVRLTDSTLNNVLLPRISDVDIQTSRQRISAFLSMSTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPVAPLWDICKGQFVGVLSALDFILIIRELGNHGSNLTEEELETHTISAWKGGKWTGFTQCFIRAGPYDNLKEIAVKILQNGISTVPIIHSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMTVHQALQLGQDSYNTYELRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRVEGIIALSDIFNFFLGYNS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2111 482 CDD E_set_AMPKbeta_like_N 22 100 - -
Gso7g2111 482 Gene3D - 327 482 IPR046342 -
Gso7g2111 482 SUPERFAMILY CBS-domain pair 157 316 IPR046342 -
Gso7g2111 482 ProSiteProfiles CBS domain profile. 343 400 IPR000644 -
Gso7g2111 482 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Gso7g2111 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 482 - -
Gso7g2111 482 SMART cbs_1 429 478 IPR000644 -
Gso7g2111 482 SMART cbs_1 347 395 IPR000644 -
Gso7g2111 482 SMART cbs_1 177 226 IPR000644 -
Gso7g2111 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Gso7g2111 482 Pfam CBS domain 345 391 IPR000644 -
Gso7g2111 482 Pfam CBS domain 432 478 IPR000644 -
Gso7g2111 482 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 482 - -
Gso7g2111 482 SUPERFAMILY CBS-domain pair 344 479 IPR046342 -
Gso7g2111 482 Gene3D Immunoglobulins 18 101 IPR013783 -
Gso7g2111 482 SUPERFAMILY E set domains 21 102 IPR014756 -
Gso7g2111 482 Gene3D - 148 319 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2111 Gso-Chr7 44964423 44973017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2111 17 111 Protein tyrosine phosphatase (PTP) family AT3G01510 30.612 8.16e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2111 - - gmx:100810976 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2111 7 44964423 44973017 Gso17g0193 17 1806720 1815145 GST
Gso7g2111 7 44964423 44973017 Gso15g1269 15 12929386 12941849 PCT
Gso7g2111 7 44964423 44973017 Gso9g0404 9 3966157 3975684 PCT
Gso15g1269 15 12929386 12941849 Gso7g2111 7 44964423 44973017 PCT
Gso9g0404 9 3966157 3975684 Gso7g2111 7 44964423 44973017 PCT