Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2106 ATGGTGGATAACGTTGGAGGCAGTTCCTCTAATGCCGAAAATAGTGGCATCAGGGAACAGGACCGGTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTACCTCCGAACGCAAAAATCTCCAAGGAATCGAAGGAAACAATGCAAGAGTGCGTGTCGGAGTTCATAAGCTTTGTAACGAGCGAGGCGTCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACTGTGAACGGGGATGACATATGCTGGGCCTTGGGTTCGCTTGGTTTTGACGACTATGCAGAGCCATTGAGAAGGTATTTGCAAAGATATAGAGAACTAGAAGTCGATAGAGGAAATAGCCCCCCCAAAAGAGAATAA 366 0.4727 MVDNVGGSSSNAENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLQRYRELEVDRGNSPPKRE* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2106 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Gso7g2106 121 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Gso7g2106 121 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Gso7g2106 121 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Gso7g2106 121 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso7g2106 121 SUPERFAMILY Histone-fold 20 117 IPR009072 GO:0046982
Gso7g2106 121 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 116 - -
Gso7g2106 121 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso7g2106 121 Gene3D Histone, subunit A 10 121 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2106 Gso-Chr7 44921483 44922485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2106 17 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.757 2.90e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso7g2106 CBFD_NFYB_HMF 3.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2106 K08065 - gmx:100786046 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2106 7 44921483 44922485 Gso17g0197 17 1850307 1851514 GST
Gso7g2106 7 44921483 44922485 Gso15g1265 15 12838390 12839067 PCT
Gso7g2106 7 44921483 44922485 Gso9g0400 9 3889254 3891079 PCT
Gso15g1265 15 12838390 12839067 Gso7g2106 7 44921483 44922485 PCT
Gso9g0400 9 3889254 3891079 Gso7g2106 7 44921483 44922485 PCT