Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2070 ATGTGTGGGGGTGCTATAATTTCTGATTTCATAGACGTGAATTTGAACAGTGGTCGGAAATTGACCACCCACAACACCCATCATCAGCTTCACACTTTCTCTGATTTCCACGCCACCTCTTCTTCCAAACATCAACCATCCTACCAGGATCCAAACCTCCCTAGGCCTCCTCCGCTTCCAAACAACCAAGGAGTGAAGTTGAAGGCTTTGACTTTGAACACTGGTCGAGTACGGAAGAACGTGTACAGAGGAATAAGGCAAAGGCCATGGGGGAAGTGGGCTGCAGAAATAAGGGACCCACGTAAGGGTGTGCGTGTGTGGCTGGGTACTTTCAACACTGCTGAAGAAGCTGCTCGTGCTTACGACAATGCCGCCAAGCGCATCCGCGGAGACAAGGCCAAGCTCAACTTTCCCGACAGCAAGAACCCATGTCTTAATCCCTTTCAACTCAAACACCTCTTTTCCAACCTCGAATCCTTCCTTGGTTTGGACTCGCTCTAA 501 0.497 MCGGAIISDFIDVNLNSGRKLTTHNTHHQLHTFSDFHATSSSKHQPSYQDPNLPRPPPLPNNQGVKLKALTLNTGRVRKNVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDNAAKRIRGDKAKLNFPDSKNPCLNPFQLKHLFSNLESFLGLDSL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2070 166 PANTHER EREBP TRANSCRIPTION FACTOR 1 142 - -
Gso7g2070 166 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Gso7g2070 166 PANTHER DNA-BINDING DOMAIN 1 142 IPR044808 GO:0003700|GO:0009873
Gso7g2070 166 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Gso7g2070 166 MobiDBLite consensus disorder prediction 37 62 - -
Gso7g2070 166 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Gso7g2070 166 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Gso7g2070 166 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Gso7g2070 166 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Gso7g2070 166 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Gso7g2070 166 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2070 Gso-Chr7 44626860 44627817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2070 1 139 AP2-EREBP Transcription Factor Family AT3G16770 58.741 1.80e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso7g2070 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2070 K09286 - gmx:100527415 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2070 7 44626860 44627817 Gso9g0354 9 3440895 3443262 PCT
Gso9g0354 9 3440895 3443262 Gso7g2070 7 44626860 44627817 PCT