Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2055 ATGAATCTCAGCAACGGAAAGGGATCCATGTCAACCCTTACTGCAAGCGTGGTTATGAAATCCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTCGTGGTGGACGATGATCCCACGTGTCTCATGATTCTTGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACCAAATGTAATCGAGCAGAAACTGCTCTCTCACTGCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATAATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTGACTCATGGTGCTTGTGATTACTTAATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCACGTGGTTCGGAAGAGGAAGAATGAGTGGAAAGACGCGGAGCAATCAGGGAGTGCTGAGGAAGGAGATCGGCAACCAAAGGCTTCTGACGAAGCAGATTACTCTTCCTCAGCGAATGAAGGCAGTTGGAGAAACTCAAAGAAGAGAAGGGATGAGGAAGAGGAGGCAGAGGATAGAGATGACACATCCACACTAAAGAAGCCACGGGTTGTTTGGTCCGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGAGTTTCTCAGCACCAGAATAACATGAACAACTCCTTCCTCAGCCCCCAGGAGGCAACATTCGGGACAATTTCTTCAATTAATGGAATTGATCTTCAAACTCTTGCAGTTGCCGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGCCAACTGGAAAAGCTGGTGTACCTATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGCCAGCAGCAACATTTAAGCACTAGTAAACCAATGAACTTGTTGCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGGCAGCTTGAATATGCGAGTCAATGCTTCCGCTACACAAGGCAGCCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATATTGGTCCTCGTGTTCCAAGACTTCCATCATCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAATGGGATTGCTGGTAATAACAGAGGACCTGCATATAATCCTGTTCCACCAAGCTCTTCGTTGTTGAGTTTTCCAATGAATCAAACCTCTGAAATGTCTGTCAACAATAGTTTTCCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCATTTCAAGAGGAAGTTACATCTGGAATCAAAGGATCTGGTGGATTTCCAAGTTATGATATTTTTAATGAACTGCACCATCAGAAGCCTCATGATTGGGAGATAACAAACCCAAACTTGACTTACAATGCCTCCCAGCATGCAAACCCTTTACAAGGTAATATTGATGTCACACCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACACAACAGACTGGTCAAAGCAGAGATGCTGCTTTGATTGGAAAAGCTATGTTCTCCATGGGAGAGGGCTTGGAACAAAATAACTTCCAAAATGCTAGTCAAAACCTCAATCCACTTCTTCTTGACAATTCAATAAGGGTCAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAATCTCTTCCCTGAGCATTATGGGCAGGAGGATCTAATGAGTGCACTTCTAAAACAGCAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAG 2040 0.4495 MNLSNGKGSMSTLTASVVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLSPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRPTGKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGSLNMRVNASATQGSPLLMQMAQSQPRGQMLSENIGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPLGSTPGISSITTKGSFQEEVTSGIKGSGGFPSYDIFNELHHQKPHDWEITNPNLTYNASQHANPLQGNIDVTPSVLVHQGFSSTQQTGQSRDAALIGKAMFSMGEGLEQNNFQNASQNLNPLLLDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGMGPSENEFDFDGYSLDNIPV* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2055 679 MobiDBLite consensus disorder prediction 660 679 - -
Gso7g2055 679 CDD REC_typeB_ARR-like 35 149 - -
Gso7g2055 679 MobiDBLite consensus disorder prediction 189 210 - -
Gso7g2055 679 SMART REC_2 33 145 IPR001789 GO:0000160
Gso7g2055 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 651 IPR045279 GO:0009736
Gso7g2055 679 MobiDBLite consensus disorder prediction 155 210 - -
Gso7g2055 679 PIRSF RR_ARR_type-B 13 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso7g2055 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Gso7g2055 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Gso7g2055 679 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Gso7g2055 679 MobiDBLite consensus disorder prediction 155 176 - -
Gso7g2055 679 Gene3D - 33 169 - -
Gso7g2055 679 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Gso7g2055 679 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Gso7g2055 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 651 - -
Gso7g2055 679 SUPERFAMILY CheY-like 32 156 IPR011006 -
Gso7g2055 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Gso7g2055 679 Gene3D - 210 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2055 Gso-Chr7 44502646 44506940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2055 68 679 Response Regulator Gene Family AT3G16857 50.767 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso7g2055 Response_reg 6.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2055 - K14491 gmx:100814930 1320.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2055 7 44502646 44506940 Gso17g0246 17 2240286 2244522 GST
Gso7g2055 7 44502646 44506940 Gso15g1204 15 12023119 12028185 PCT
Gso7g2055 7 44502646 44506940 Gso9g0338 9 3281640 3285382 PCT
Gso15g1204 15 12023119 12028185 Gso7g2055 7 44502646 44506940 PCT
Gso9g0338 9 3281640 3285382 Gso7g2055 7 44502646 44506940 PCT