Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2048 ATGGGGAGAGCTCCTTGTTGTGAGAAGGTGGGGTTGAAGAAAGGAAGATGGACAGCTGAAGAGGATAAGATCTTGACCGATTACATCCAAGAAAATGGGGAGGGATCATGGAGTTCCTTGCCCAAGAATGCAGGTTTGTTAAGATGTGGAAAAAGTTGTAGACTGAGATGGATCAACTACTTGAGATCAGACGTGAAGAGAGGCAACATCACTCCTCAAGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATTTACCAGGTCGCACGGACAATGAAATAAAGAACTATTGGAATTCCCATTTGAGGAGAAAGATTTACTGCTTCATGAAGTCCTTAAATGAGTCCCTCCCTCCCATTGACATGGCTGCTGTAAACGTAGCTGCTAAATCCAAGAGAAGAACCGGTGGTCGAGGTACAAAAACTCAACCAGCCACGCAAGAGGACAAGAAAGTGGCTCATAACACAAGCGAAGTGCCTCAAGTTCAACCAATGCTCAAAAGAAGTGCAACTTCACAAAGTTTCAACGATGAGGAGAGCCTAACAGATTATGGTTTGGATGCTTATTGTGAGATGGGGGACAACACATATGACACAACTGCTTCATGCCCCAGCATAGATGAAGTTGAGGCCTTGGGACCTTATCAATGGTTAGATGATGAAATCATGAAACTTACTCGCATGTTTGAAAATGGGGTGCTCGTAAACCCAGGCGGGGTTTTAACCAATAATGAAGAGTGGCTTATTAGAAATAACTTTGGACTAATGGGAGAGGGCTCATCAAATGCAGAAAGTGGAGAGTGGAACACTAGCTGTTCGTCAGTGAATTCTGTCTATGACTATCATCATTATCAGTGGCCTGATATGCAATTAGAAGGTAGTGTTCAATCCTATAATCCTTGGGATCTTTGTGAAGAAAACCAGAACGTGGCTAATTGCTTTTGGGGTACTGGCCATAATGAAGGAAATGGCTTTTACCAGTGA 1014 0.4329 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWSSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAAVNVAAKSKRRTGGRGTKTQPATQEDKKVAHNTSEVPQVQPMLKRSATSQSFNDEESLTDYGLDAYCEMGDNTYDTTASCPSIDEVEALGPYQWLDDEIMKLTRMFENGVLVNPGGVLTNNEEWLIRNNFGLMGEGSSNAESGEWNTSCSSVNSVYDYHHYQWPDMQLEGSVQSYNPWDLCEENQNVANCFWGTGHNEGNGFYQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2048 337 CDD SANT 16 61 IPR001005 -
Gso7g2048 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso7g2048 337 Gene3D - 13 66 - -
Gso7g2048 337 Gene3D - 71 116 - -
Gso7g2048 337 MobiDBLite consensus disorder prediction 141 166 - -
Gso7g2048 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso7g2048 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso7g2048 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso7g2048 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso7g2048 337 SMART sant 66 114 IPR001005 -
Gso7g2048 337 SMART sant 13 63 IPR001005 -
Gso7g2048 337 CDD SANT 71 112 IPR001005 -
Gso7g2048 337 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 294 - -
Gso7g2048 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso7g2048 337 PANTHER MYB TRANSCRIPTION FACTOR 2 294 - -
Gso7g2048 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2048 Gso-Chr7 44444436 44447080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2048 1 235 MYB Transcription Factor Family AT5G49330 55.319 1.43e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g2048 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2048 K09422 - gmx:100795019 716.072