Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2043 ATGGCGAATAACTTAGCGGTGCAACTGGTTGGTTCAGAGATGCATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTCTGTGGTACTATTGTCTTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAGGATAACCCAAATTTTGTCCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGATGCAAGGTTCTCCTGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCGTGGATTTTATCAGAAGAAATAGATTCAGGAACCACAACTGCATATACTGGTGACATGAGTAACAATATAAATGTCAAAAGTCATGAACTCAGACTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGACACAAATGATCATAACGCCTCTACTGTGCCTAATGGAGGCACTGTTCCATATTTTGATCAACAAGATCAAATTTTACTGAATGACAGTTTCGGCAATGTAGCCAACAATCTATCTGCAGAAATTCCTTCTTTTGGTAATCTTACTCAGCCAATTGCTGGGAGCAACAGAGTTCCTTACAATTTTTCTGAAAGTGTTACTCTTCAGACGATGGACAATCAAGCAAATCCACATGAGCAGAAGAATAATACAGTTTCCTTAAGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTTGAATCACCAGTTTCATCCATTTATGAACCATATTCGTCTCTGGTAGTGGATAGTCAGGAATCTTCTCTGCCAGAACAAGTATTTACTATCACTGATGTATCCCCTACATGTGTATCTTCCACCGAGAAATCAAAGGTCCTGGTGACTGGATTTTTTCTTAAGGACTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGTTGCTGGGTATCACCACACTCTCCAGGATTTGTGAATCTCTACTTGAGCATTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCCTGCTTTGCATGATCCTGCAGTTTCAATGGAAGAGAGTGACAATTGGGACGAGTTTCGACAACAAATGAGGCTTGCATATTTGCTCTTTGCTAAACAATTGAACCTTGATGTTATCTCCAGTAAAGTATCACCTAATAGACTTAAAGAGGCTAGGCAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCCCTGTTCGGAATTACATTGAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGCTGCAAGACTACTGAATATGATGCTCATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATAATTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCATTGGATTTCCGTGATAGGTTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCGAAGCCAAATTTGGTCACTGATCCTACTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACGACTGATCCAGTAAATCCTGCAAACCTTACCGAGGACCAGCAGAACCTGAAGGATACGTTGACAGCTTACCGAACTGCTGCTGAGGCAGCTTCCCGCATACATGCTGCATTTAGGGAACACTCTCTAAAACTGAGAACTAAGGCGGTTGCATCTTCCAATCCAGAGGCTCAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACCACGAGACAAAGAAAATGATGGCAGCTGCCGCTCGCATTCAGTGTACATACCGTACATGGAAGATTCGTAAAGAATTTCTTAACATGCGTCGTCAGGCTGTTAAAATTCAAGCTGCATTCCGGTGCTTTCAAGTTCGGAAGCATTATCGCAAAATTCTTTGGTCTGTTGGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGTGGTCTCCAGGTCAAAACTGTCGATGCGGGAACCGGAGATCAGGATCAGCAAAGTGATGTAGAGGAGGAATTCTTCCGGACTGGTAGGAAGCAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCAAAGAAAGCACAAGAAGAGTACAGGAGGATGAAATTGGCCCTTAATCAAGCAAAGCTGGAGCGGGAATACGAACAACTTCTTAGTACTGAAGTGGACATGCAACTGTAG 2715 0.4258 MANNLAVQLVGSEMHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAYTGDMSNNINVKSHELRLHEINTLEWDDLVDTNDHNASTVPNGGTVPYFDQQDQILLNDSFGNVANNLSAEIPSFGNLTQPIAGSNRVPYNFSESVTLQTMDNQANPHEQKNNTVSLSGVDSLDTLVNDRLQSQDSFGMWVNHIMSDSPCSVDDPALESPVSSIYEPYSSLVVDSQESSLPEQVFTITDVSPTCVSSTEKSKVLVTGFFLKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYLSIDGHKPISQVVNFEYRTPALHDPAVSMEESDNWDEFRQQMRLAYLLFAKQLNLDVISSKVSPNRLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSQAKDALFGITLKNRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYNWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVNPANLTEDQQNLKDTLTAYRTAAEAASRIHAAFREHSLKLRTKAVASSNPEAQARKIVAAMKIQHAFRNHETKKMMAAAARIQCTYRTWKIRKEFLNMRRQAVKIQAAFRCFQVRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVKTVDAGTGDQDQQSDVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALNQAKLEREYEQLLSTEVDMQL* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2043 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 802 IPR027417 -
Gso7g2043 904 Gene3D - 749 799 - -
Gso7g2043 904 SMART ANK_2a 588 617 IPR002110 GO:0005515
Gso7g2043 904 SMART ANK_2a 627 656 IPR002110 GO:0005515
Gso7g2043 904 Pfam CG-1 domain 47 127 IPR005559 GO:0003677
Gso7g2043 904 ProSiteProfiles Ankyrin repeat region circular profile. 588 616 - -
Gso7g2043 904 Coils Coil 869 898 - -
Gso7g2043 904 ProSiteProfiles IQ motif profile. 857 885 IPR000048 GO:0005515
Gso7g2043 904 SMART CG_1_2 28 129 IPR005559 GO:0003677
Gso7g2043 904 SMART iq_5 751 773 IPR000048 GO:0005515
Gso7g2043 904 SMART iq_5 774 796 IPR000048 GO:0005515
Gso7g2043 904 SMART iq_5 855 877 IPR000048 GO:0005515
Gso7g2043 904 SUPERFAMILY Ankyrin repeat 539 652 IPR036770 -
Gso7g2043 904 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 904 - -
Gso7g2043 904 Gene3D Immunoglobulins 347 442 IPR013783 -
Gso7g2043 904 SUPERFAMILY E set domains 352 439 IPR014756 -
Gso7g2043 904 Gene3D - 522 658 IPR036770 -
Gso7g2043 904 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Gso7g2043 904 ProSiteProfiles IQ motif profile. 775 799 IPR000048 GO:0005515
Gso7g2043 904 ProSiteProfiles IQ motif profile. 752 781 IPR000048 GO:0005515
Gso7g2043 904 Pfam IQ calmodulin-binding motif 777 796 IPR000048 GO:0005515
Gso7g2043 904 Pfam IQ calmodulin-binding motif 754 772 IPR000048 GO:0005515
Gso7g2043 904 ProSiteProfiles CG-1 DNA-binding domain profile. 25 134 IPR005559 GO:0003677
Gso7g2043 904 Pfam Ankyrin repeats (3 copies) 539 617 IPR002110 GO:0005515
Gso7g2043 904 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2043 Gso-Chr7 44389573 44398289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2043 28 889 CAMTA Transcription Factor Family AT3G16940 53.288 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso7g2043 Ank_2 1.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2043 K21596 - gmx:100793970 1808.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2043 7 44389573 44398289 Gso17g0257 17 2334236 2348299 GST
Gso7g2043 7 44389573 44398289 Gso15g1193 15 11836670 11846664 PCT
Gso7g2043 7 44389573 44398289 Gso9g0327 9 3145700 3156017 PCT
Gso15g1193 15 11836670 11846664 Gso7g2043 7 44389573 44398289 PCT
Gso9g0327 9 3145700 3156017 Gso7g2043 7 44389573 44398289 PCT