Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2023 ATGGGAACTCCACCAACGGATGAGCTCGTGAAGAAGATCCAACAGCTAGAGGAAGGACACGCGCACCTGAAGCAAGAAATGTCCAAACTCAAACTCTCCGATGTGAGACACGGCCACCATCGCCAGAGGTCACACTCCGTCTCTCCGCAGCGTTCCAGACTGGGCGCTCCGCCGAAGAAGCGGAGCGATGCACCGGCTGCGTGGAAGAGAGGCTCGTGTTCTTTTAAACAGTCCTCGCCGCTGCAGAGGGAGAGTCGCGGTGGCGGTGATCCTCAAATTCACGGCGGAGGAGGAGAAGAAGCTGCTCCGCGCCGTGGTCCTTCCGCCGTCAATTTCACTGAACAGCAGTATCTTAATATATTACAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTATATGGTTATACAGCAGAGGAAGCTTTAGGACAGGATGGGATTGAGCTACTTGTAGACCCTAGGGATTTGGACTTGGCCAATAATACAGTGAATCGTGTTATGATGGGAGAGAGCTGGACAGGGCAATTTCCGATCAAGAATAAAATGGGGGAGAAGTTTTTAGCTGTAGCAACTAATACGCCTTTTTATGACGATGATGGAAGCTTAGTTGGGCTAATTTGTGTCTCTATTGATTTGCGGCCCTTTCTCGAAATGAAAGTTCCAATGCCTAGTGTAAGGAACATCGAGTCAGATTCAGATTCAGGTGGAACCCGACCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACACTCAACAGCCGCTTCAAGCTTCTATAGCTTCGAAAATTTCAAATTTGGCATCAAAGGTGGGTAACAAAGTTAAGTCAAGGATCTGGACGGGAGAAAACAATTTGGATCGTGAAAGTGGGAGTGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAATCTGTTTTTTTAGAGCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCATCCCATTTTGGTGCGTTTCCTCATGTCGAAGAAAAATCCCAGGGAAAAGCTCTGAGAGAGTCTGGTGATGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTAAGGCGGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAAGATCGAGAAGGATCAGATGCAGCAAATGTTCGTGTTGCTGGGCCATGGAGACAGAATGATCAAGAAAATGAATCAGTTAATCAGAAGATTCTTTCTTCTAGCTTGAAGCAAGAAAGCCAGGCAGGTGAAAGTAATCGCCCTACTAACCATGAGGCTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTGGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTCTATCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAAGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTCATGGGGGCCGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGTGTAAATTATCTTCATCACTGTAACCCACCTATCATCCACAGAGATTTAAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCCCGTCTTAAGCATGAAACATTTCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCGGAAGTTCTTCGTAATGAACCCTCTGATGAGAAATCTGATGTTTATGGCTTTGGAGTAATATTATGGGAAATTGTAACTGAAAAGATACCTTGGGATAATCTCAACTCCATGCAGGTGATTGGAGCTGTAGGATTCATGAATCAACGGCTAGAAATTCCAAAAAATGTTGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGCGATCCAGCTTGTCGGCCAACGTTCCCAGAACTGCTTGAAAGGCTTAGAGATCTGCAAAAACAGTATGCCATTCAGTTCCAGGCAGCCCGATCCACTGCCAAGGAAAGCACCCAAAAGGAGTCCTAG 2313 0.4565 MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHHRQRSHSVSPQRSRLGAPPKKRSDAPAAWKRGSCSFKQSSPLQRESRGGGDPQIHGGGGEEAAPRRGPSAVNFTEQQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGQDGIELLVDPRDLDLANNTVNRVMMGESWTGQFPIKNKMGEKFLAVATNTPFYDDDGSLVGLICVSIDLRPFLEMKVPMPSVRNIESDSDSGGTRPRSSITNKLGLDTQQPLQASIASKISNLASKVGNKVKSRIWTGENNLDRESGSGESHHSEHSLSESVFLEQREDANSSGASTPRGDVPPSHFGAFPHVEEKSQGKALRESGDESEGKSIHKIIPKAEAWIQRKTLSWPWRTKDREGSDAANVRVAGPWRQNDQENESVNQKILSSSLKQESQAGESNRPTNHEASGSWSSFNVNSTSSASSCGSAGSGAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETFLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYGFGVILWEIVTEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHSDPACRPTFPELLERLRDLQKQYAIQFQAARSTAKESTQKES* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2023 770 PRINTS Tyrosine kinase catalytic domain signature 566 579 IPR001245 GO:0004672|GO:0006468
Gso7g2023 770 PRINTS Tyrosine kinase catalytic domain signature 605 623 IPR001245 GO:0004672|GO:0006468
Gso7g2023 770 PRINTS Tyrosine kinase catalytic domain signature 652 662 IPR001245 GO:0004672|GO:0006468
Gso7g2023 770 PRINTS Tyrosine kinase catalytic domain signature 671 693 IPR001245 GO:0004672|GO:0006468
Gso7g2023 770 PRINTS Tyrosine kinase catalytic domain signature 715 737 IPR001245 GO:0004672|GO:0006468
Gso7g2023 770 Pfam Protein tyrosine and serine/threonine kinase 492 744 IPR001245 GO:0004672|GO:0006468
Gso7g2023 770 MobiDBLite consensus disorder prediction 31 106 - -
Gso7g2023 770 Gene3D PAS domain 125 227 - -
Gso7g2023 770 SMART pas_2 115 182 IPR000014 -
Gso7g2023 770 MobiDBLite consensus disorder prediction 302 320 - -
Gso7g2023 770 Pfam PAS domain 129 226 IPR000014 -
Gso7g2023 770 SUPERFAMILY Protein kinase-like (PK-like) 482 744 IPR011009 -
Gso7g2023 770 TIGRFAM sensory_box: PAS domain S-box protein 114 226 IPR000014 -
Gso7g2023 770 MobiDBLite consensus disorder prediction 393 451 - -
Gso7g2023 770 Gene3D Phosphorylase Kinase; domain 1 485 569 - -
Gso7g2023 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Gso7g2023 770 SMART serkin_6 492 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2023 770 MobiDBLite consensus disorder prediction 353 372 - -
Gso7g2023 770 CDD PAS 124 226 IPR000014 -
Gso7g2023 770 MobiDBLite consensus disorder prediction 295 372 - -
Gso7g2023 770 ProSiteProfiles PAS repeat profile. 113 184 IPR000014 -
Gso7g2023 770 MobiDBLite consensus disorder prediction 239 263 - -
Gso7g2023 770 SUPERFAMILY PYP-like sensor domain (PAS domain) 113 225 IPR035965 -
Gso7g2023 770 Gene3D Transferase(Phosphotransferase) domain 1 571 758 - -
Gso7g2023 770 ProSiteProfiles Protein kinase domain profile. 492 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2023 770 MobiDBLite consensus disorder prediction 241 263 - -
Gso7g2023 770 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 28 769 - -
Gso7g2023 770 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 769 - -
Gso7g2023 770 MobiDBLite consensus disorder prediction 410 451 - -
Gso7g2023 770 CDD STKc_MAP3K-like 498 744 - -
Gso7g2023 770 MobiDBLite consensus disorder prediction 321 336 - -
Gso7g2023 770 Coils Coil 6 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2023 Gso-Chr7 44253488 44260510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2023 1 766 MAP Kinase Kinase Kinase AT3G06620 57.707 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso7g2023 PK_Tyr_Ser-Thr 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2023 - - gmx:100800867 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2023 7 44253488 44260510 Gso17g0274 17 2467969 2476104 GST
Gso7g2023 7 44253488 44260510 Gso9g0303 9 2894773 2901206 PCT
Gso9g0303 9 2894773 2901206 Gso7g2023 7 44253488 44260510 PCT