Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2011 ATGGAGGAGAAGAGAGAGAAAGAGGGAAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCGAACATGAGCATGAGCACAAGCTTCCCTTTCTCCCCTGCTTTCTCTAGCATCTTTGACATGATGCCACCTCCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACAACTTTGCTGGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATGCCCCTTCTTTATTCGACTGGCCCCAAAACACCACCGCCACGTCAGCACCACCACCTCTCACCGCCCAAATCAACCACCCTCTTCCGTCTCCGGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCATCTCCCAACTATTCGTCTATTTCGTCGTCGTCGAACGAAGCCGCCGCCGCCGCCGCCGCCAACAAAGCAACGGGAAATGATAATGATGCCGATGATGAAACAACAATAGATGCAGCTGCAGGCAGAGGAGAAGAAGATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCCGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCGTGCCCTGCCACGTCACGGGCTAGCCTCGGGTTCATGCATTCCGAAGCAAGTGGTGGGTTCGGACCCACTAGTGGATTAGGTTCGGCACACTTTATGCTGCCACAACAACAACAGTTTCGGGACCAAGCACAAGCAGCAATGTTGTTGTACAACTCCAACTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTACCCCAATACGTCGTCGTTGAGTGGCTTCCTTCAAGGCCAAGAGAATCATCAGCGAAGTGTGGTGGCTCCTCACGCTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTTCCAACGCATATGAGGAATGAGGAGAGTGAAGATCGTGTTTAG 1176 0.5136 MEEKREKEGNSKSSSTMANSVAFSDEIPNMSMSTSFPFSPAFSSIFDMMPPPPPSSSHDPKAPNNFAGFMDLLAVPADYYAPSLFDWPQNTTATSAPPPLTAQINHPLPSPASSNVPDGSEVLNTPASPNYSSISSSSNEAAAAAAANKATGNDNDADDETTIDAAAGRGEEDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFMHSEASGGFGPTSGLGSAHFMLPQQQQFRDQAQAAMLLYNSNSSSLSLPLNVVNSASCVNNSYPNTSSLSGFLQGQENHQRSVVAPHAFLRDNGLLQDIVPTHMRNEESEDRV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2011 391 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso7g2011 391 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 66 380 - -
Gso7g2011 391 MobiDBLite consensus disorder prediction 1 20 - -
Gso7g2011 391 ProSiteProfiles WRKY domain profile. 204 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso7g2011 391 MobiDBLite consensus disorder prediction 47 66 - -
Gso7g2011 391 SUPERFAMILY WRKY DNA-binding domain 201 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso7g2011 391 MobiDBLite consensus disorder prediction 162 182 - -
Gso7g2011 391 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 380 IPR044810 GO:0003700
Gso7g2011 391 MobiDBLite consensus disorder prediction 84 198 - -
Gso7g2011 391 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso7g2011 391 MobiDBLite consensus disorder prediction 85 144 - -
Gso7g2011 391 SMART WRKY_cls 209 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2011 Gso-Chr7 44139202 44142197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2011 179 386 WRKY Transcription Factor Family AT2G47260 51.905 2.99e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso7g2011 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2011 - - gmx:100788697 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2011 7 44139202 44142197 Gso17g0291 17 2600634 2603731 GST
Gso15g1162 15 11363742 11366578 Gso7g2011 7 44139202 44142197 PCT
Gso9g0294 9 2810224 2812424 Gso7g2011 7 44139202 44142197 PCT