Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2010 ATGAGCTACCACAGCGCTCGCCGGAGCCCCGGGGGATTCCGCTCTGGCGCTGCTCCGCACCACCGCGCCTTCGACAGTCCCCCGCGTCGCTCCCCCGGCAGGGGCGGCGGATTCCGGCCGATGGGCGGCGAGGGTCCTGGGGAATTCGGATTCAACGGCCACCAGGCGCCGCCGCCGCTCGCTGGCCAGAAGCGAGGGTTTCCTTTCTCCGGACGCGGTGGCGGCTCGCCCGATCATTTAGATGGTGGAAATTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAAGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACTTCAGAAGAAGCTGATCAAGCAATTAGAGCATTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGGTGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTGCATTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACAGATCCTATGGGTGATCGTATGCCTCCCTCTAATGCTTGGCATCCCTTGCATCCGCCGAATATGGGGCCATCTTCTAATGCTGGTTTTCATGGCATGGGGTCACCGTTGCTTCCAAGATCTGGTGACATGGCATTGCCTACAGATGCTGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATTCCAATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTGTTCAGTCATCTCAGGAACTGCCACCTTCCCACCAGTTGTACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGGCCAGCCACAACTTTCTCTCTCTGCTGGTCCTCTTCCATCTCAGAAGATACATGGAGTAAGTGGACAGTTTCTAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACTCATCTTGATACCGGCATGCAATCTCATACTACATTAACTACACCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTATCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTAACAAAAAGCAGTCGCAATGGGCTGGGCCTGGGCCTGTAGCACAAACAGTGGCCAGCACTCTTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAATATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAAGGCTTCAAGTATTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTACATGAACAGCAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCACAAATCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTTGTTCCAGGCATATGGAGTTACAGGCCCCCAAAACGTGCAGGAAGTGGGATATAAGCAGTTGCAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCGCAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2214 0.486 MSYHSARRSPGGFRSGAAPHHRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDHLDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPMGDRMPPSNAWHPLHPPNMGPSSNAGFHGMGSPLLPRSGDMALPTDAGGPMTSLGGPIDGRFQVQSIPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLSLSAGPLPSQKIHGVSGQFLTSQPQTQQSALSAAIPQTHLDTGMQSHTTLTTPNQQQVPPSVQQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEANKKQSQWAGPGPVAQTVASTLAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLHEQQKQQQRPSVQQSQTQSQPSILPAQQVPQIQQVQPQSHLQGQVLHQQQIQQPSLSSLFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2010 737 ProSiteProfiles WW/rsp5/WWP domain profile. 596 623 IPR001202 GO:0005515
Gso7g2010 737 CDD RRM2_FCA 178 257 IPR034645 -
Gso7g2010 737 MobiDBLite consensus disorder prediction 365 427 - -
Gso7g2010 737 Gene3D - 592 638 - -
Gso7g2010 737 PANTHER RNA BINDING PROTEIN 35 665 - -
Gso7g2010 737 CDD WW 593 623 IPR001202 GO:0005515
Gso7g2010 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Gso7g2010 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Gso7g2010 737 Gene3D - 81 173 IPR012677 -
Gso7g2010 737 Pfam WW domain 594 621 IPR001202 GO:0005515
Gso7g2010 737 MobiDBLite consensus disorder prediction 621 661 - -
Gso7g2010 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Gso7g2010 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 246 IPR000504 GO:0003723
Gso7g2010 737 Gene3D - 174 265 IPR012677 -
Gso7g2010 737 SUPERFAMILY WW domain 595 627 IPR036020 GO:0005515
Gso7g2010 737 MobiDBLite consensus disorder prediction 257 285 - -
Gso7g2010 737 ProSitePatterns WW/rsp5/WWP domain signature. 596 621 IPR001202 GO:0005515
Gso7g2010 737 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 35 665 - -
Gso7g2010 737 MobiDBLite consensus disorder prediction 1 80 - -
Gso7g2010 737 SUPERFAMILY RNA-binding domain, RBD 72 170 IPR035979 GO:0003676
Gso7g2010 737 MobiDBLite consensus disorder prediction 365 435 - -
Gso7g2010 737 MobiDBLite consensus disorder prediction 465 499 - -
Gso7g2010 737 MobiDBLite consensus disorder prediction 533 555 - -
Gso7g2010 737 SUPERFAMILY RNA-binding domain, RBD 177 280 IPR035979 GO:0003676
Gso7g2010 737 MobiDBLite consensus disorder prediction 630 661 - -
Gso7g2010 737 SMART rrm1_1 178 253 IPR000504 GO:0003723
Gso7g2010 737 SMART rrm1_1 87 163 IPR000504 GO:0003723
Gso7g2010 737 SMART ww_5 591 623 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2010 Gso-Chr7 44123829 44133938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2010 88 266 Eukaryotic Initiation Factors Gene Family AT1G71770 25.806 9.72e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2010 - - gmx:100798390 1278.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2010 7 44123829 44133938 Gso17g0292 17 2611764 2621817 GST