Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1989 ATGATCGTGAGCCAGAAGGTGGTAGCGGAAGCGGAAATTATCTGTCAGCAGAACATTCCGATGTTGGACGTGAAGTATCATATTTGCGTGGCGCAAGAACACAACGTGAAGGTTGAGGTTTCTCCCAAATCATCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAGTTGCTCCGAGATCATTAAAGATTCCATTTTGGAGGCCCCTGCGATGAATCTTGTCCCAAATGTGCGTTCTGGTAGCTATGCTGAGATGGGACCGCGGGTTTCTATGGATGACGAACACATCTGTATTGATGACCTAGGTGCTCAACTTGGATTTGTGTTCAAGTGCCCGATACCGAGTGCATTTTATGCAGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGCGATTGTTTTTTGAAGATGCAGACATGCTGCAGTCATATGATGCTGATGCGTTTTTTCTACAGAAGTTGGAGGATTCCCATCGGAGAGCTTTTCTACGGGCAGATCTTGCCTTGGCTGATGAACAAACTGTTAGTAGTTCTTGTGGGACTACTGCATTGACTGCCCTTGTGCTTGGAAGACATTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCCGGAGAGGTGTGGCTGTTGAGATGTCTAACGATCACAGGCCAAGTTATCTACCTGAGCAGAGGAGGGTGGAAGAGTTAGGTGGGTTCATTGATGATGGATATCTCAATGGCTATCTTTCAGTAACTCGAGCCCTTGGGGATTGGGACTTGAAATTTCCACTTGGTGCTGCATCCCCTCTTACTGCGGAGCCGGATGTACGGCTGGTTACATTGACTGAGGATGACGAGTTCTTGATCATTGGATGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGTCGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAGCTAGTCAAGGAAGCATTGCGCCTAAATACATCAGATAATCTCACTGTGATTGTCGTATACTTGTCGCCCATTGAAAGCATTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAAAACTTGCAGTCTGTCTGAAGAAGCCCGTAATAGGTTGAAGAGCTTAATTGAGGGAAATTGA 1161 0.4634 MIVSQKVVAEAEIICQQNIPMLDVKYHICVAQEHNVKVEVSPKSSSPSVPIFGQAVSCSEIIKDSILEAPAMNLVPNVRSGSYAEMGPRVSMDDEHICIDDLGAQLGFVFKCPIPSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDADMLQSYDADAFFLQKLEDSHRRAFLRADLALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSYLPEQRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLTAEPDVRLVTLTEDDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVVYLSPIESIVESCPPQRRRFKTCSLSEEARNRLKSLIEGN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1989 386 PANTHER PROTEIN PHOSPHATASE 2C 8 373 IPR015655 GO:0004722|GO:0006470
Gso7g1989 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Gso7g1989 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Gso7g1989 386 SMART PP2C_4 69 347 IPR001932 -
Gso7g1989 386 Pfam Protein phosphatase 2C 87 341 IPR001932 -
Gso7g1989 386 Gene3D - 68 352 IPR036457 -
Gso7g1989 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Gso7g1989 386 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 8 373 - -
Gso7g1989 386 CDD PP2Cc 79 349 IPR001932 -
Gso7g1989 386 SUPERFAMILY PP2C-like 75 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1989 Gso-Chr7 43923955 43926589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1989 1 385 PP2C-type Phosphatase Gene Family AT1G48040 56.818 2.84e-149 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1989 K14803 - gmx:100781949 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1989 7 43923955 43926589 Gso17g0315 17 2810769 2813215 GST
Gso7g1989 7 43923955 43926589 Gso9g0272 9 2576210 2578743 PCT
Gso9g0272 9 2576210 2578743 Gso7g1989 7 43923955 43926589 PCT