Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1979 ATGGAAGCTGAGTTTGGGGGGAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTCACTGCTCAACCACTCAATTCAGTGCCATCAGATTGTAGGGGTTGCCAGTTTTTCCCACCTCATCCTGAAATTCCTGCAAAAAATGCTAATCCATCTACCACCAATTTGTCTTCTTCTGTATTCATCTTAGGTGAAGGTAAGAGGGAATTGGAGAAAAGGAGGAGGGATGTTATAGCTGAAGGTGAAGGTGAGGGGCTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCAAGGTTACCCTCTCATGCTGGAAGAAGAGGAAAAAAGTGGAAAGAAAACAAAGGTAATTGGGACCAATACAACAACTACTACTACTACTACCTCTAACCGTGCCGTTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCATAAGGTTTGTGATGTTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTTTGGCAGGCCACAATAGGAGGAGGAGAAAAACTCATCCTGATGTCTCTGTTGTTAATGAAGGCTCTCTGAACGATCAAAGGGACAGTAACTATCTGCTGATGAGTCTGTTACGGATACTGACCAATTTGCATTCCAATGGCTCAGATCATACAAGGAACCAAGATATTCTCTCTCATCTGCTGAAGAACCTGGCAAGTCTGGCTGGTCCAAATAATGGTGGAAGGTTAGCACCCTTACTGGAGGAATCTAAAGGCTTGGTAAATGCTGGGACGCATGGAGCTGATCATGATAAACCCAACCTTAACTCAAATGCTCCTGAAGCTTCCAGGCCTTCTTCTTCCATCAAGACAGACAATGGCATCATCGCTCAGGACCCTCCAATGTCGGTGGTGCAGTATGAAACACCTGCTAATGGCATGACACAAAAATGTATAGCTTCAGGTGATGGTGGAGTAGGAAATTTAAAACCTCCTTCAGGACCACTGCTCTCAAATGTATGTGAACCAAGGGACAGCGTTCCATCCCAATTAACTACAGCAGAGACTAAAGTAGGAAGGGGAAACTTGAATAACATTGACCTTAATAATGTTTACAATGATATACAGAATACTGTTGAGAATCATAAGAAGCCTTATCCTCCTGTGGCTTCAGGGATGGGGTTTATTGACCATGCCTCATGGTTGCAATGTGATTCTCTCAAAACAAGTCCTCCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCATCTGATTTTCCCCTTCTTCTCCGATCACAGATTCTCAACTGGTTATCCCGCAGTCCCACGGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACAATATATCTCCGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCAAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCGTTTTGGAGAACAGGATGGGTATATGCAAGGGTGCAGCACGCTGTAGCTTTCCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGCGTCTCAAAAGCCCACAACATTGTATGATTTCATGCATTAATCCACTTGCTGTTCCTGCAAGTGCTAGTGCTCAGTTTATTGTGAAAGGTTTCAACCTTTCCCAATCTAGCACAAGGTTGCACTGTGCACTTGAAGGGAAGTATCTGGTACATGCTAGTTGTCATGATTTGATAGGTGGAGCTGATGCACCCATTCAGCATCTAAGCTTCTCTTGTCAAATACCAAATGTAACTGGGAGGGGGTTTATTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAAGTTTGTTCGGAGATCTGCAAGCTGGAAAATGTGATTGAGGAAGCTGAAACCACTGATGATATCCAGATAAAAAACCAACATATGGAAGAAAAGACTCGAGCTTTGGATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCATGTGAAATTTAAGCTAGGTTCCATGGCTCCTTTCCATGATCTCTTCCAATTCAATCGGTTCGCTTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAGAAACTCTTGGACATTATATTTGAGGGTGGTGTTGATGCAGGAGAGCATGCCTCCATTGAGCTTGCATTGTTGAACATGGGTCTTCTACACAGAGCTGTAAAGAGAAACTGTAGGCCTATGGTAGAACTACTGTTAAGATTTGTTCCAGTTAAAACCTCAGATGGTGCAGACAGTGAAATGAAGCAAGTTGCCAAAGCCCCTGACAGATTCTTATTTAGACCTGATACTGTCGGGCCAGCTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCAGAGAATGTGTTGGATGCATTAACCAATGATCCACGAATGGTGGGAATTGAAGCATGGAAAAGTGCCCGGGACAGTACAGGTTTGACCCCTAACGACCATGCTTGCCTTAGGGGCTATTACTCTTACATTCAACTAGTCCAGAACAAGACCAACAAAAAAGGTGAAAGACAACATTTGGTTGATATCCCTGGAACTGTTGTAGATAGTAACACAACGCAGAAGCAATCAGATGGAAATAGGACATGTAGAGTTCCAAGCTTAAAGACTGAGAAGATTGAAACCACAGCAATGCCCCGTCAATGTAGGGCATGCCAGCAGAAGGTGGCTTATGGTGGCATGAAAACAGCAATGGTTTATAGGCCAGTCATGCTCTCCATGGTGACCATAGCAGTTGTGTGTGTCTGTGTAGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTATTATGTCTTCCAGCCCTTCAACTGGGAATCATTAGAGTATGGGGCAATGTAA 3123 0.4387 MEAEFGGKNQYLYGPVVSGMKKAVVGNGKRSLEWDLNDWRWDGDLFTAQPLNSVPSDCRGCQFFPPHPEIPAKNANPSTTNLSSSVFILGEGKRELEKRRRDVIAEGEGEGLNDEGGSLSLNLGGQGYPLMLEEEEKSGKKTKVIGTNTTTTTTTTSNRAVCQVQDCRADLSNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVSVVNEGSLNDQRDSNYLLMSLLRILTNLHSNGSDHTRNQDILSHLLKNLASLAGPNNGGRLAPLLEESKGLVNAGTHGADHDKPNLNSNAPEASRPSSSIKTDNGIIAQDPPMSVVQYETPANGMTQKCIASGDGGVGNLKPPSGPLLSNVCEPRDSVPSQLTTAETKVGRGNLNNIDLNNVYNDIQNTVENHKKPYPPVASGMGFIDHASWLQCDSLKTSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPLLLRSQILNWLSRSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLAASNDSFWRTGWVYARVQHAVAFLYNGQVVLDVPLRLKSPQHCMISCINPLAVPASASAQFIVKGFNLSQSSTRLHCALEGKYLVHASCHDLIGGADAPIQHLSFSCQIPNVTGRGFIEVEDHGLSSCSFPFIVAEQEVCSEICKLENVIEEAETTDDIQIKNQHMEEKTRALDFLQEMGWLLHRSHVKFKLGSMAPFHDLFQFNRFAWLVDFSMDHGWCAVMKKLLDIIFEGGVDAGEHASIELALLNMGLLHRAVKRNCRPMVELLLRFVPVKTSDGADSEMKQVAKAPDRFLFRPDTVGPAGLTPLHVAASMSGSENVLDALTNDPRMVGIEAWKSARDSTGLTPNDHACLRGYYSYIQLVQNKTNKKGERQHLVDIPGTVVDSNTTQKQSDGNRTCRVPSLKTEKIETTAMPRQCRACQQKVAYGGMKTAMVYRPVMLSMVTIAVVCVCVALLFKSSPRVYYVFQPFNWESLEYGAM* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1979 1040 SUPERFAMILY Ankyrin repeat 805 925 IPR036770 -
Gso7g1979 1040 Gene3D - 768 938 IPR036770 -
Gso7g1979 1040 MobiDBLite consensus disorder prediction 458 486 - -
Gso7g1979 1040 MobiDBLite consensus disorder prediction 313 346 - -
Gso7g1979 1040 MobiDBLite consensus disorder prediction 226 247 - -
Gso7g1979 1040 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 21 1039 - -
Gso7g1979 1040 SUPERFAMILY SBT domain 160 241 IPR036893 GO:0003677|GO:0005634
Gso7g1979 1040 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Gso7g1979 1040 Pfam SBP domain 162 235 IPR004333 GO:0003677
Gso7g1979 1040 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Gso7g1979 1040 MobiDBLite consensus disorder prediction 327 345 - -
Gso7g1979 1040 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 1039 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1979 Gso-Chr7 43754193 43761192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1979 27 1039 SBP-box Gene Family AT3G60030 44.874 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso7g1979 SBP 8.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1979 - - gsj:114419913 2014.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1979 7 43754193 43761192 Gso15g1557 15 21006306 21017589 PCT
Gso7g1979 7 43754193 43761192 Gso9g0686 9 9544156 9555761 PCT
Gso15g1557 15 21006306 21017589 Gso7g1979 7 43754193 43761192 PCT
Gso9g0686 9 9544156 9555761 Gso7g1979 7 43754193 43761192 PCT