Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1976 ATGGCATCGGATCTAAATTCGGGGTTGTCCAAGGAAACATCTGTTTTTGGGTTGAAAGCATGGGAATTGATGGGGATAATAGTTGGGTTGTTCATTATAATCATTCTCGTGGTGATATCAATATGTCTTACTTCAAGAAAGAAATCTAGAAGAGTCAATGGCATGCTTCCCCTTAGCCATATGTTATCGATTTCAGATGAGATCAAGGAAATTAGAGTTGATCAAGTTTCAGCCAATAATCATCCTCAGAATGGAGCTTTTGTGAGTCTGTATGACAGGTTTAGTGACAGAGACTCCGAAAAGGTTTTGATCCAAACAAATAATAATGGGGAAAATAGCAGTCAATCAGGCTCTTTTGTTCATCTTAAGAAAGATGATGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGTCTGTTTCTACTTACTGGTCTTCTTCGCATCCTATAACTGCACCGTCCCCCTTGTGTGGTCTGCCTGAATTCTCTCACCTTGGCTGGGGACACTGGTTTACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCGAAAGACAACGTTATTGGTGAAGGTGGATATGGTGTTGTTTATCAGGGCCAGTTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAACAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGGCACAAGAATTTGGTTAGACTTCTAGGCTATTGCATTGAAGGCACTCACAGGTTGCTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCAGCAGTATGGTTTTCTTACTTGGGATGCTCGGATTAAAATTCTCCTTGGAACTGCAAAAGCGCTAGCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAATCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTGGCAAAGTTATTGGGTGCTGGAAAAAGTCATATCACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGATTACTAAACGAGAAGAGTGATGTTTATAGTTTTGGGGTATTGCTCCTCGAAGCAATTACTGGAAGAGACCCAGTGGATTATAACCGGCCAGCAGCTGAGGTAAATTTGGTTGACTGGCTGAAGATGATGGTTGGGAATAGGCGTGCAGAAGAGGTGGTAGACCCTAACATTGAGACCAGGCCATCAACAAGTTCCCTTAAACGTGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCGCGCGAGGATCGAAGACGCCGAAAGAGCCTGGCAGGAAATATTGAGCTGGGGGACCAGAAGGAGACTTCTGACACAGAAAAGACTGAGAATCCAGATTCTAAGTCTAATGGCAGAAGGAACCAAAGGAAGTAG 1515 0.4264 MASDLNSGLSKETSVFGLKAWELMGIIVGLFIIIILVVISICLTSRKKSRRVNGMLPLSHMLSISDEIKEIRVDQVSANNHPQNGAFVSLYDRFSDRDSEKVLIQTNNNGENSSQSGSFVHLKKDDGSQSGEESGAKSVSTYWSSSHPITAPSPLCGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMQQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYNRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSSLKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSLAGNIELGDQKETSDTEKTENPDSKSNGRRNQRK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1976 504 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1976 504 PANTHER OS01G0323000 PROTEIN 2 504 - -
Gso7g1976 504 PANTHER RECEPTOR-LIKE KINASE PLANT 2 504 - -
Gso7g1976 504 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1976 504 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Gso7g1976 504 Gene3D Phosphorylase Kinase; domain 1 165 257 - -
Gso7g1976 504 MobiDBLite consensus disorder prediction 105 123 - -
Gso7g1976 504 MobiDBLite consensus disorder prediction 454 504 - -
Gso7g1976 504 SUPERFAMILY Protein kinase-like (PK-like) 166 460 IPR011009 -
Gso7g1976 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Gso7g1976 504 CDD STKc_IRAK 188 454 - -
Gso7g1976 504 MobiDBLite consensus disorder prediction 105 139 - -
Gso7g1976 504 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1976 504 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1976 Gso-Chr7 43728506 43733432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1976 17 456 Trihelix Transcription Factor Family AT1G70460 39.333 2.83e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso7g1976 Pkinase 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1976 - - gmx:100785337 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1976 7 43728506 43733432 Gso17g0329 17 2969418 2974370 GST
Gso7g1976 7 43728506 43733432 Gso15g1552 15 20734896 20740277 PCT
Gso7g1976 7 43728506 43733432 Gso9g0683 9 9470838 9476212 PCT
Gso15g1552 15 20734896 20740277 Gso7g1976 7 43728506 43733432 PCT
Gso9g0683 9 9470838 9476212 Gso7g1976 7 43728506 43733432 PCT