Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1966 ATGGCTTTCACACTAGACAGGTTCGAAGAGAACATGGTGTTCACTTTCGAGTCTCAGAAGTCAGTGCCAGCACCCTTTCTGACAAAGACATACCAGCTTGTGGATGACCCTCACACTGACCACATTGTGTCATGGGGTGAAGATGAAACCACATTTGTTGTGTGGAAGCCCCCTGAGTTTGCCAGAGATCTTCTTCCCAACTATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTGTGTGAAATCCACAGGAGAAAAGCACCTCAGCAGCATCACCAACTCTTCCATGACCAACTACCATCCCAGATTCTTCAGAAAGATGAAAGTCTCTGCTGGCTTGACACTCCACTACCATCTTCAAAGCCAAACACAGACATTCTAACAGCACTTTCTGAAGACAACCAAACACTAAGGAGAAAGAACTTCATGCTCTTATCAGAACTCAGTCACATGAAGAGTTTGTACAATGACATCATATACTTCATCCAAAACCATGTAAAATCACCACCCTTTGAACAAAGAAGCAGCAGTGTTATTCCAAAGCTGGTAGAACTGGACTCATTGCATGAGTCTCCAAATGACATGGGGGTTCTCAGAACTGCCAAAAGTTGTGTTGTGGATAAGTCTTTGGTTACTTCTACTGAGGAATCGAACAGTTCTGTGAAGCTCTTTGGGGTCACTCTAAGTGGCAGAAAGATTGCACCCAGATAA 801 0.4357 MAFTLDRFEENMVFTFESQKSVPAPFLTKTYQLVDDPHTDHIVSWGEDETTFVVWKPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQLPSQILQKDESLCWLDTPLPSSKPNTDILTALSEDNQTLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKSPPFEQRSSSVIPKLVELDSLHESPNDMGVLRTAKSCVVDKSLVTSTEESNSSVKLFGVTLSGRKIAPR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1966 266 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1966 266 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1966 266 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1966 266 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1966 266 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Gso7g1966 266 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1966 266 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 263 - -
Gso7g1966 266 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 263 IPR027725 -
Gso7g1966 266 Gene3D - 18 116 IPR036388 -
Gso7g1966 266 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1966 Gso-Chr7 43568372 43570320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1966 10 262 HSF AT1G46264 49.020 2.68e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso7g1966 HSF_DNA-bind 6.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1966 K09419 - gmx:100789404 545.814