Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1962 ATGGGCAACTGTTGCTCTCAAGGCAACGGTGCCGATGGCCCGTCCGATGACGCTGCCGCCAATGACAAGGGAGAAACTAACCAACAAAGTAGTAATCATGCAAACAATAATGATAATTCTGCAAACCCTACCACCGCCCCGCCACCGACGTCAACGCCACCACCCACGGTCACGCCACCTACTTCAAAACCCTCAAAACCGGCCGCCATGGGCCCGGTCCTCGGCCGGCCGATGGAGGACGTGAGAGCCACATACACCATAGGGAAGGAGCTAGGGAGGGGCCAATTTGGTGTAACGCATTTGTGCACAAACAAAACCACGGGGCAACAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTTGTGAACAAGGAAGACATAGAGGATGTGAGAAGAGAGGTGCAAATCATGAACCATCTCTCGGGTCAATCTAACATCGTGGAACTTAAGGGTGCCTATGAGGATAAACAATCGGTGCATTTGGTCATGGAACTTTGTGCGGGTGGTGAACTTTTTGATCGTATCATTGCTAAGGGACATTACACTGAACGCGCCGCGGCTTCATTGCTGAGAACCATAATGCAAATTATTCACACTTTCCATTCCATGGGTGTCATTCATAGAGATCTTAAGCCTGAGAATTTCCTCATGTTGAATAAGGATGAAAATTCACCCGTCAAGGTCACAGATTTTGGTCTATCCGTCTTTTTCAAAGAAGGGGAGACATTCAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAGGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTAAGTGGTGTCCCTCCGTTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCTTAAGAGGTCACATTGATTTTACAAGCGATCCATGGCCTTCAATATCCAATGCAGCAAAGGATCTTGTAAGGAAAATGTTGACTACAGACCCCAAACAAAGACTGACATCACAAGAAGTTCTAAATCATCCATGGATCAAGGAGGATGGCGAAGCACCAGATAAACCACTTGACAATGCTGTACTGAATAGGCTGAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTAGCTCTAAGGGTCATTGCTGGATGTCTATCAGAAGAAGAAATCATGGGATTGAAGGAAATGTTCAAGGGGATGGACACTGACAACAGTGGAACCATTACAATTGAGGAGCTCAAGCAAGGGCTTGCAAAGCAGGGAACAAAGCTTACAGAGCAAGAAGTTAAGCAATTATTGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACCGCAACAATGCAAATGAACAGAATGAACAGAGAAGAACATCTTTATACTGCCTTCCAATACTTTGATAAAGATAACAGTGGGTTTATTACCACTGAAGAACTAGAACAAGCCCTCCGTGAGTATAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGACGCATTAACTATGATGAGTTTGCGGCAATGATGAGAAAAGGAAATCCAGAAGTTATGACAAAAAAAAGGCGTGATTCATTGCCATTGCCATAG 1626 0.4459 MGNCCSQGNGADGPSDDAAANDKGETNQQSSNHANNNDNSANPTTAPPPTSTPPPTVTPPTSKPSKPAAMGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTNKTTGQQFACKTIAKRKLVNKEDIEDVRREVQIMNHLSGQSNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIMQIIHTFHSMGVIHRDLKPENFLMLNKDENSPVKVTDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISNAAKDLVRKMLTTDPKQRLTSQEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLLEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREYNMHDGRDIKEILQEVDGDNDGRINYDEFAAMMRKGNPEVMTKKRRDSLPLP* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1962 541 SUPERFAMILY EF-hand 383 523 IPR011992 -
Gso7g1962 541 Gene3D Phosphorylase Kinase; domain 1 86 170 - -
Gso7g1962 541 ProSiteProfiles EF-hand calcium-binding domain profile. 497 528 IPR002048 GO:0005509
Gso7g1962 541 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1962 541 MobiDBLite consensus disorder prediction 1 77 - -
Gso7g1962 541 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Gso7g1962 541 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Gso7g1962 541 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Gso7g1962 541 SMART efh_1 390 418 IPR002048 GO:0005509
Gso7g1962 541 SMART efh_1 462 490 IPR002048 GO:0005509
Gso7g1962 541 SMART efh_1 497 525 IPR002048 GO:0005509
Gso7g1962 541 SMART efh_1 426 454 IPR002048 GO:0005509
Gso7g1962 541 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Gso7g1962 541 SUPERFAMILY Protein kinase-like (PK-like) 72 371 IPR011009 -
Gso7g1962 541 CDD STKc_CAMK 85 342 - -
Gso7g1962 541 MobiDBLite consensus disorder prediction 21 45 - -
Gso7g1962 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso7g1962 541 Pfam Protein kinase domain 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1962 541 Gene3D - 351 526 - -
Gso7g1962 541 Gene3D Transferase(Phosphotransferase) domain 1 171 350 - -
Gso7g1962 541 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Gso7g1962 541 ProSitePatterns Protein kinases ATP-binding region signature. 91 118 IPR017441 GO:0005524
Gso7g1962 541 MobiDBLite consensus disorder prediction 46 66 - -
Gso7g1962 541 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1962 541 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 29 531 - -
Gso7g1962 541 Pfam EF-hand domain pair 391 451 IPR002048 GO:0005509
Gso7g1962 541 Pfam EF-hand domain pair 460 523 IPR002048 GO:0005509
Gso7g1962 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 531 - -
Gso7g1962 541 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
Gso7g1962 541 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1962 Gso-Chr7 43514606 43519465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1962 1 536 EF-hand Containing Proteins AT5G12180 78.172 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso7g1962 Pkinase 3.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1962 K13412 - gmx:100775885 1014.6