Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1950 ATGACTTCCTCACTCGTGAAGATCCAAGGCGAACAGGTCCTCACCAACGATTTTCAGGACCTTTCAATCAAAGATCTGAGTGAGAAAGGGACTGAGGCAGAGATTCACAAGGTGGGGTCTTATGGAAGCCATGGGGGAATCTGTGCTATCTGCTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATCCTTCATTGGGCTACATACCGTGAGAAAGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGCTCACTTGATGGCAGCATTCAAGATTACATGTTTGAGGAGAGTGTGTGCCTGCTACTTCGGGCCTCATGGTTCACACCTTTATCTGTTGAAGAACATGTGGTTCATGAAGATGCATATGAAGACCTAGAAGATTATTATCAGTACGAGGATGATGATGATGATGATGATATGGATGAAGTTTACTATGGTGGTTCGTCCAGTCTTCGGGTTATTGGCAACCGTAGATGGGGAGATAATGGTTATGTCAGGGCTGGTCGTCAAGAAGCTCGGCCAGTCCATCGTCCAAACTTTCAGGATTCAGGAGCAAGTTCTTCTTCGCATGAGCCGAAGAAGAAAGAGGCTGGGAAAATTATCACAGGCAGAAGGGCAAAGAGGGCACAGAAAAGGGAAGCTGCTGACAAGGCGGCGGAAGCAAAGCATCAGCAGCATTTAGTAAGGTTGGGTAGGAAGTGA 756 0.4656 MTSSLVKIQGEQVLTNDFQDLSIKDLSEKGTEAEIHKVGSYGSHGGICAICLDKIVLQETALVKGCEHAYCVTCILHWATYREKVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRASWFTPLSVEEHVVHEDAYEDLEDYYQYEDDDDDDDMDEVYYGGSSSLRVIGNRRWGDNGYVRAGRQEARPVHRPNFQDSGASSSSHEPKKKEAGKIITGRRAKRAQKREAADKAAEAKHQQHLVRLGRK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1950 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 251 - -
Gso7g1950 251 Coils Coil 222 242 - -
Gso7g1950 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 150 IPR013083 -
Gso7g1950 251 SUPERFAMILY RING/U-box 47 97 - -
Gso7g1950 251 ProSiteProfiles Zinc finger RING-type profile. 48 91 IPR001841 -
Gso7g1950 251 SMART ring_2 48 90 IPR001841 -
Gso7g1950 251 MobiDBLite consensus disorder prediction 206 244 - -
Gso7g1950 251 MobiDBLite consensus disorder prediction 186 251 - -
Gso7g1950 251 Pfam Ring finger domain 48 91 IPR001841 -
Gso7g1950 251 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Gso7g1950 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1950 Gso-Chr7 43325922 43331976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1950 3 251 C3H Transcription Factor Family AT5G19430 58.140 2.23e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1950 - - gmx:100777135 450.284