Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1946 AAATACAAGCCTTCAGTTGTGGCTACTACAAGGCGGTTCCCTTCGGATTCCGGTGCCTTTGCGGACTGGTCGGCCCCTCCGTCTGCTGTCTCCGGCCGCGGCGACGATCTCTCCCTCGGCTTCAATGCTTCATCCGCCACCACACATGGTGGCGGTGCAGCCATGTGGCCGGGGGCATCCAGGTCATTTAACTACAACATGGCGCCTCACCACGACATCTTCGTGGTAGCGCCCGCTTCCTCTTTCCACCACCACCACGACCACAACGACGCCGTATTGTCCGATCCAAATAACGGTTCTAACAATTCGAACAACAATCCTGGAACTGCACTCGGTGTGAATGTTTTCCCTCTCCTAACCGCCACGCCATGCCTCGAGAGCGAGGGCATAATGGGAAACATCAGCCACCACCGTAACAGAATTCAGTTATGGGAAGATCACGAGTCTTCTCCACCGCAGCAGCAACAGGGTCACGTGGAGCGTGACACGTGTGGGGATGGGGGTTTGGGTGGGAGTGGGACTAACACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGACTGTAGTCACCGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCGCCACGCACGTGAAGAGCACGTGGGTGCCGGCGTCGCGGCGGAGGGAGAGGCAGCTCATGACGGTTGCGGCGGCCAGGTCCAGTGGGGACACTTCTGGTGCCAAGAAACCTAGGCTTGTTGCTTCCCAGACTACTTCGCATACTTCAACGTCTAATAATACTAATACCACTCCTCCGAGGAGTTTTGACACTGGTTCTAGCCACCAAGATGTGGGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCGGCGGTGTTCAAGTGTGTTCGTGTAACAGCAGTGGATGATGGTGGGGAAGATGAGTATGCTTATCAAGCAGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAAGAAGGGTATCCTAATTTATCAGAATTGCATTTGGGTGGTGGAAATGGGGTTTCCTCTTCATCTCCAATGGTGGATCCTTCTCATGATGTCTATGCAGCTTCAGGTGGTGGGTTACTTCTTGGAGGTTCATCAAACTATGGTAATCATCCAATAAATTAA 1155 0.5342 KYKPSVVATTRRFPSDSGAFADWSAPPSAVSGRGDDLSLGFNASSATTHGGGAAMWPGASRSFNYNMAPHHDIFVVAPASSFHHHHDHNDAVLSDPNNGSNNSNNNPGTALGVNVFPLLTATPCLESEGIMGNISHHRNRIQLWEDHESSPPQQQQGHVERDTCGDGGLGGSGTNTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMTVAAARSSGDTSGAKKPRLVASQTTSHTSTSNNTNTTPPRSFDTGSSHQDVGFKESLPCQVRAPAVFKCVRVTAVDDGGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKEGYPNLSELHLGGGNGVSSSSPMVDPSHDVYAASGGGLLLGGSSNYGNHPIN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1946 384 MobiDBLite consensus disorder prediction 147 167 - -
Gso7g1946 384 MobiDBLite consensus disorder prediction 241 273 - -
Gso7g1946 384 Pfam Domain of unknown function (DUF702) 174 330 - -
Gso7g1946 384 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 379 - -
Gso7g1946 384 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 281 329 IPR006511 -
Gso7g1946 384 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 176 218 IPR006510 -
Gso7g1946 384 MobiDBLite consensus disorder prediction 86 108 - -
Gso7g1946 384 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 379 IPR007818 GO:0003700|GO:0006355
Gso7g1946 384 MobiDBLite consensus disorder prediction 93 108 - -
Gso7g1946 384 MobiDBLite consensus disorder prediction 227 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1946 Gso-Chr7 43285765 43288079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1946 7 363 C2H2 Transcription Factor Family AT5G12330 51.128 4.04e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso7g1946 DUF702 3.6e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1946 - - gmx:100816514 742.651