Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1944 ATGGACCTAACCTCCATCAGTACCCACAACACAAACACAACACAAACCTTAGATGCTGCTAATACTACTACTAAAACCACCCCACCAACGCCAATCCCCACCACCACCCCAAAGTCTCTATCTTTCGCCAACGGCACACTCAAGCGCCATCCCACCACCACCGTTGCTCAGCCGCCGTCCATGGTGGTTTCCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCATCGGCGGCCATGCTCTCGACGGCTGCGGCGAGTTCATGCTGTCTTCTTCCACCGTCCCCTCCGACCCCCGCTCCCTAAAATGCGCCGCGTGCGGCTGCCATCGCAACTTCCACCGCCGCGAACCCCAAGAAAACAACCTCAACAACAACCTTAAAAACAACAACCCCACATTTTTAAACTGTATCTATACCCTATCAGCGCCAGCACCACTCTCACACCGAGCCATGAGCCAAAGCACATCACCGAGCCTGAGTTCAAGCCCGAGCCACAGCCAGAGCCCGATATCTAGCCCATCACCGCCGCCACTCTCGCACGTGCCACCCTACCACGCTTCTGCACCTCACATGCTTCTAGCCCTCGGCAGTGCCTATTCTGCCGAACCCTCCGACGAACACCACCACCACCAACAACAACAACACAAAAGCTTCAATTTGTCGATGATGAGGAGCGAGAACCCCACCAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCATAGCTTCTCAGAGAAATTGGGGTGGAGAATGCAGAAAGGGGATGACGGGTTGGTCCAAGAGTTTTGCAATGACATTGGGGTCTCAAGAGGGGTCTTCAAAGTGTGGATGCATAACAATAAGAACACTTTTAGGAAGAAATCTGAAGATGGAAATGGAAATGCAAATGCTCCTCAAAGTAATGATGATGACAATGCCAATGGTGGTGGAGGAGGATTTGATAGTGATATCAACAACCCCTACAACCCAAATAGCAACAACAACGATATTCACATGAAAGAAGTAGAGGATGCGTGTGTGAACAATGTTGTTCATGTTTCTCTTAATGAGATGTCATCTTAG 1077 0.507 MDLTSISTHNTNTTQTLDAANTTTKTTPPTPIPTTTPKSLSFANGTLKRHPTTTVAQPPSMVVSYKECLKNHAASIGGHALDGCGEFMLSSSTVPSDPRSLKCAACGCHRNFHRREPQENNLNNNLKNNNPTFLNCIYTLSAPAPLSHRAMSQSTSPSLSSSPSHSQSPISSPSPPPLSHVPPYHASAPHMLLALGSAYSAEPSDEHHHHQQQQHKSFNLSMMRSENPTKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQEFCNDIGVSRGVFKVWMHNNKNTFRKKSEDGNGNANAPQSNDDDNANGGGGGFDSDINNPYNPNSNNNDIHMKEVEDACVNNVVHVSLNEMSS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1944 358 MobiDBLite consensus disorder prediction 169 183 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 227 242 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 200 242 - -
Gso7g1944 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 1 315 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 36 55 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 1 55 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 289 334 - -
Gso7g1944 358 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Gso7g1944 358 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 230 287 IPR006455 -
Gso7g1944 358 MobiDBLite consensus disorder prediction 148 185 - -
Gso7g1944 358 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Gso7g1944 358 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 116 IPR006456 -
Gso7g1944 358 Gene3D - 215 291 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 148 168 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 294 311 - -
Gso7g1944 358 SUPERFAMILY Homeodomain-like 221 291 IPR009057 -
Gso7g1944 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 315 - -
Gso7g1944 358 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1944 Gso-Chr7 43247025 43248703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1944 61 289 ZF-HD Transcription Factor Family AT1G69600 46.835 1.92e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso7g1944 ZF-HD_dimer 7.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1944 - - gmx:100814924 608.601