Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1943 ATGAACGATCATCTGGTGCTGTTCGTGGACCATCTGGTGCGGCCCGTGCCGGTGGTCGAGCCGCTGGCCCAACAACCCCCCGAGCCCGTGACGCCCGTCAATGAGGCCGCGGTGGCGGGTCCCTCCGGGTCGTCTCCGTCTGCGGAGGACGACGGAGACGACGACGGGGAGGACGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGATTTGGAGACCCCCTGCTCCTGCAGTGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGTCCTATGAACCTGGTTATACTGCCCCGCCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGACTTGCGTGATACCCGGCTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCATTGATTTTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACAGATTCTGAAGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAAGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAAACCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGGACCAGGACCACCAACAATGAATACACACCAACCGGAACAAGTGTAA 864 0.5266 MNDHLVLFVDHLVRPVPVVEPLAQQPPEPVTPVNEAAVAGPSGSSPSAEDDGDDDGEDAPLLQLAECRICQEEDSVSDLETPCSCSGSLKYAHRKCVQRWCNEKGDIICEICHKSYEPGYTAPPPRPQPEETTIDIGGGWTISGMPLDLRDTRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSEAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQTGQRRGLQFAIGPGPPTMNTHQPEQV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1943 287 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
Gso7g1943 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 121 IPR013083 -
Gso7g1943 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 278 - -
Gso7g1943 287 Pfam Protein of unknown function (DUF3675) 118 236 IPR022143 -
Gso7g1943 287 CDD RING_CH-C4HC3_MARCH 67 113 - -
Gso7g1943 287 Coils Coil 155 175 - -
Gso7g1943 287 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Gso7g1943 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 278 IPR033275 -
Gso7g1943 287 SUPERFAMILY RING/U-box 66 117 - -
Gso7g1943 287 SMART ringv_2 66 113 IPR011016 GO:0008270
Gso7g1943 287 MobiDBLite consensus disorder prediction 22 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1943 Gso-Chr7 43206763 43210427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1943 53 113 C3H Transcription Factor Family AT2G37950 42.188 3.13e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1943 - - gmx:121175179 523.087