Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1942 ATGGATCTGCAAAATGTGCAAAACCATAGCATGATGCGTTTGGTTCTGTCCACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGGTTCACTGAAGCTATTAATCAGCTTGGAGGTGCAGAAAGGGCAACTCCAAAGAGTCTTATGAGAGTGATGGGGATTCCAGGGCTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAGCCAACCGCTAGAAACCTGTTCTGACAACAAGCAACAAGGTTACTGTGAAATCCAGAACAGTGATGGTCATTTCAGCAAGGAAATCAGCATTGGGACCCAGAATCAGATGACTGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAAAGAAAACTCAATGAACAAATTGAGGTACAAAAACATTTGCAGCGTAGGATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTAACAAAGGCACATGAAGCACTTGCAAGACACAGTTCTTCCACAACTGGTATGGAACTTGCAAAAGCTGAACTTTATCAGTTAGAGTCAATAATCAACAATGCATGTCCAGACTCTCCCCTTTCAGAACTGACAGAAACAAGAGGGCTCAGTTTGAACTGTGGAGAGAGGAAACAAGACAGAGGAACCATGTGTTCACTTGAAAGCTCTTTGACATCATCTGAAAGCTCTGAACAACACACCATGGATGAGGCAGAAAACCCTCAAAAGTTTAATGGTGTTTCAGTTGAATTGCCATTGATGTCCATTCATCCAGAAGAAGATAAAGCATTCAAGGGAGATACAAGTGATGGTAGAAAGAGAAGTGCAGCAACTGATTCTGATCATTGTGTTGATCAACCTTGTGGAAACAAGTTGAGGAAATCTGAAGTGTCAGAAATGCTTGACTTGAACTGCCAATACCAGAGAGACATTGACTCAAGTGTGAAAGAAATAGATTTAAATTTCAGTTCAAGCTTTTAG 996 0.4177 MDLQNVQNHSMMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAERATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQPLETCSDNKQQGYCEIQNSDGHFSKEISIGTQNQMTESLKIAEALQMQMEVQRKLNEQIEVQKHLQRRIEAQGKYLQSVLTKAHEALARHSSSTTGMELAKAELYQLESIINNACPDSPLSELTETRGLSLNCGERKQDRGTMCSLESSLTSSESSEQHTMDEAENPQKFNGVSVELPLMSIHPEEDKAFKGDTSDGRKRSAATDSDHCVDQPCGNKLRKSEVSEMLDLNCQYQRDIDSSVKEIDLNFSSSF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1942 331 MobiDBLite consensus disorder prediction 266 289 - -
Gso7g1942 331 MobiDBLite consensus disorder prediction 222 236 - -
Gso7g1942 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 331 IPR044848 GO:0003700
Gso7g1942 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Gso7g1942 331 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
Gso7g1942 331 MobiDBLite consensus disorder prediction 266 285 - -
Gso7g1942 331 Gene3D - 20 78 - -
Gso7g1942 331 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 331 - -
Gso7g1942 331 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Gso7g1942 331 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Gso7g1942 331 Coils Coil 121 141 - -
Gso7g1942 331 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1942 Gso-Chr7 43175112 43177052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1942 6 328 G2-like Transcription Factor Family AT1G69580 45.238 7.01e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso7g1942 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1942 - - gmx:100776601 651.358