Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1939 ATGGCAGCAGCAGAAGAATTAGAAGAGCACTTGCAAGAGCTCAGATCCAAAGCCACAGAGCTTTTCCTCAGAGAAGAATGGAATGCTTCAATCGAAGCCTATTCCCTCATCATCACTCTCTGCACTCAAACCCTCTCCCATAATTCTCACCCAACCCAAAACCTTCGCAGATCCCTCTGCATTGCCCTATGCAACCGCGCAGAAGCAAAATCCAAATTGAAGAATTTCCATTGCGCCCTTCAAGACTGTGACCACGCTTTGGAACTCGACGCCACACATTCGAAGACCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTCAATCGCTATTCTTCCGCTCTCGAGTGTTTCAGAAGCGCCGCGATCGATGGGAACGCTGAAAACGCAAGTGGGTACTTGGAAAGATGCAAAAGTTTGGAGCTTTTGTCGAAAACGGGGTGTTTGGATCTTTCAGATTGGGTTTCAAATGGGTTCAAAGGGAAGGTTCCGGAGCTCGCTGAACACATTGGTGCTGTGGAGATTAGAAAGTCTGAGATCAGTGGGAGAGGGTTGTTTGCAACGAAGAATATTGATGCCGGGGCTTTGATTTTGGTCACCAAGGCAATTGCAATGGAGAGGAGCATCATAATGGGAGGGGTTCAGGATCTTTGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGGTTGTTGGGAAGTGTTACAAGACAAAGGGTTTGATTACTAGGTTGTCTTGTGGGGAGAATGAGGATGAGCTTGAGGTGCTTGATGTAGGTCTCTTTAGGCCTGAGAGTGTGGAGAAGGATGATGGTGATGCAGTTGTTGGGGTTGATATGGTTAAGTTGGTTGGGATATTGGATGTGAATTCTCTCACTGAGGATGCTGTTTCAGCCAATGTGTTGACGAGGGGGAATGATTGTTATGGTGTAGGGTTGTGGCTGTTGCCTTCCTTTGTGAACCACTCTTGTGTTCCCAATGCGAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCCAAGGATTTGAAGGCTGGTGAGGAGGTTACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCAGTGAATTGGGGGATCCATTGCAAGTGCAAGAGGTGTAGGTTCGAGGGGGAAGTGTTCTCAAAACAAGAAATAAGAGAGATTGAGATTGGCCTTGAGAGAGGGATGGATGTGGGGGGGGTGGTGTTCAAGTTGGAGGAGCAAATGAAGAGAATGAAGGTTAGGGGAAAGGAAAAAGGGTATTTGAGGGCTTCATTTTGGGAAGCATATTCTGAGGCTTATAGGTCTGAGAGAGCAATGAAGAGGTGGGGGAGGAGGATTCCTACAATGGAGGCGGTGGTTGATAGCATCAGTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGATGATGGTGGAGGAGTTGAAGAAAAATGGTGGTGGAGTTGTTGAGAGGGAGAAGGTTTTCAAGATGGCTAGAGATGTGTTTGGGAAGGTGGTGAAAAAGCAAGCAATGAAGACACTTCTTGAACTTTGCATTGGTGATTGA 1584 0.4684 MAAAEELEEHLQELRSKATELFLREEWNASIEAYSLIITLCTQTLSHNSHPTQNLRRSLCIALCNRAEAKSKLKNFHCALQDCDHALELDATHSKTLLCKGKILLCLNRYSSALECFRSAAIDGNAENASGYLERCKSLELLSKTGCLDLSDWVSNGFKGKVPELAEHIGAVEIRKSEISGRGLFATKNIDAGALILVTKAIAMERSIIMGGVQDLCEDAQLAMWKNFIDKVFEVVGKCYKTKGLITRLSCGENEDELEVLDVGLFRPESVEKDDGDAVVGVDMVKLVGILDVNSLTEDAVSANVLTRGNDCYGVGLWLLPSFVNHSCVPNARRLHVGDYLVVHASKDLKAGEEVTFAYFDPLCGLSKRKEMSVNWGIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDVGGVVFKLEEQMKRMKVRGKEKGYLRASFWEAYSEAYRSERAMKRWGRRIPTMEAVVDSISDVVGGDHRLLKMMVEELKKNGGGVVEREKVFKMARDVFGKVVKKQAMKTLLELCIGD* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1939 527 SMART tpr_5 11 44 IPR019734 GO:0005515
Gso7g1939 527 SMART tpr_5 94 126 IPR019734 GO:0005515
Gso7g1939 527 SMART tpr_5 60 93 IPR019734 GO:0005515
Gso7g1939 527 CDD SET_SMYD 306 385 - -
Gso7g1939 527 SUPERFAMILY SET domain 171 385 IPR046341 -
Gso7g1939 527 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 8 494 - -
Gso7g1939 527 Coils Coil 4 24 - -
Gso7g1939 527 Pfam SET domain 181 359 IPR001214 GO:0005515
Gso7g1939 527 SMART set_7 170 366 IPR001214 GO:0005515
Gso7g1939 527 SUPERFAMILY TPR-like 6 121 IPR011990 GO:0005515
Gso7g1939 527 Gene3D SET domain 276 389 IPR046341 -
Gso7g1939 527 ProSiteProfiles SET domain profile. 170 360 IPR001214 GO:0005515
Gso7g1939 527 Gene3D Tetratricopeptide repeat domain 4 144 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1939 Gso-Chr7 43082866 43084918 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso7g1939 SET 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1939 - - gmx:100812233 1036.56