Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1937 ATGGGTAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGTCGCCAAGCAACATATGCTAAAAGGAAAAATGGGATTATGAAAAAAGCTGCTGAAATATCTATACTTTGTGATATAGATATTATACTTCTTATGTTTGCACCAAATGGAAAGCCTTCATTATGTAGGGGGAGGCACAGTAACTTTGAGGAGGTTATTGCGAAGTTTGGTCAACTAACTCCTCAAGAAAGGGCAAAAAGGAAGTTAGAAACTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTATGGGTACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAGGCTATTACAAACTCAAATTTCTGAAACTCATAAGAGATTAAGTCATTGGACTGAGTTTGATAAAATAAGCAATGTGGATCAACTAGGACAAATGGAAAATTCACTTAGAGAGTCACTTAATCAAATTCGAACCCGTAAGGAAAATATAAAAAAACAGCAACAACTTATGTCGCTACAATGCAATAATCAGTTCAACGAAATGAATATTCCTTTTAGAATGAGTGTAGAGCAACAACTGCAACCTTTGTCATGGATTGCCAATGATGATAACCACAATATAGTTTTACCCGAGGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTACAAGTTCATCTTTTGGGAGTCATGTCAGTTATCTTGGCTCAAGTATCAAGAATGACATGTCAAACTCAGCACAAGAAAATGGAGTCCTTAGTGATATGAGCAATACTGCCCCAATGAGGCTACAATTAAATGGGCATTTTCCATACCTACCTTACAATTTTAATTTACCGAACAATTTGAAGTTTCAACCAACTGCAGAGATCAACCCTTATGAAAATCCTGTAGATTATCATGTTAATGGAGGCTTTGAAGCACCTAGATCTGGTTATGACTCTAACAATCACCATGATTGGGCTTCCACATCAGGGCCTTGTGGTGTTACTATGTTTGATGAGCAATTATATGCCCAGGCAAGCTCCACTAAAATGAACTTTGGTTTTATATAG 1083 0.3647 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAEISILCDIDIILLMFAPNGKPSLCRGRHSNFEEVIAKFGQLTPQERAKRKLETLEALKKTFKKLDHDVNVQEFMGTSSQTIEDLSNQARLLQTQISETHKRLSHWTEFDKISNVDQLGQMENSLRESLNQIRTRKENIKKQQQLMSLQCNNQFNEMNIPFRMSVEQQLQPLSWIANDDNHNIVLPEDSNMFLHKDVEGSTSSSFGSHVSYLGSSIKNDMSNSAQENGVLSDMSNTAPMRLQLNGHFPYLPYNFNLPNNLKFQPTAEINPYENPVDYHVNGGFEAPRSGYDSNNHHDWASTSGPCGVTMFDEQLYAQASSTKMNFGFI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1937 360 CDD MADS 2 54 - -
Gso7g1937 360 Coils Coil 77 97 - -
Gso7g1937 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 351 - -
Gso7g1937 360 Coils Coil 154 174 - -
Gso7g1937 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Gso7g1937 360 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gso7g1937 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso7g1937 360 Coils Coil 114 134 - -
Gso7g1937 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso7g1937 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso7g1937 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso7g1937 360 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 351 - -
Gso7g1937 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gso7g1937 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1937 Gso-Chr7 43018391 43023185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1937 1 349 Type I MADS-box Gene Family AT2G03060 48.942 2.62e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso7g1937 SRF-TF 7.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1937 - - gmx:100811701 702.59