Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1936 ATGGGAATGGTCTATGCTGACATGGACTCTCTCTCTCTTTGTTCCAACTACGGTGTGGTTTCTTCTCATCAAGATAATTGCTATGTCTCCAACGGGGGCACAAACTGGGGTTTTCCCTTCATGAGGGAATGTCCCAACTTTGAGGATCACCCCAACAACAGTGATGATGTTGCTGAAGAGGGTAAAGGGTCTTATAGCAGTGGTGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTCAACGATGAGAACAGCCCTAATGAGAATTCTAATAGTGGCGGTTCCGGGCATTCCAAGCTTTGTGCTAGAGGGCATTGGAGACCAGCAGAAGATTCCAAGCTCAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAGAAGTTAGAAGGAAGATCAGGAAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGGGCATTCAGTGAGGAGGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCAGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGAAAGTACAGAGAACAGTCCAGTGCCTACAGGAGGAGGCTGAGCCAATCTTCTTCTGTTTACAGAAGAGTGGAGGAACTTAACACAACAACAACAACAAGCAGCACTCTTGTCTCAAGAAACACAGCCACTGCAGAACAACAACCACCACCACCCTATTGTCTTAATCTTCCAAATAATGGAGGACTTGCCAACAACATTAACATGCCTAGTTCTCCATATGCTGCAACACCCTTCCATGGAGGAGTAGTGGCTGTTGCTCCTTCTAGTGGGGTTGAGTTTGGCTTATTAAATGGCTCACCCCACATGACTGCTGCCAAAGAAGCATTCTCAACCCCCAAGCTGGTCCCTCATATTGCCTTGTATCCTCAACAAACACCACTTGATTTCTTTTCAGGTGTTAGAAGCAGCAATGACATGGTGGGAGAGTATTTTGGACAGAACGATCATCACCAACCATCATTTGGTTTCAACCCTCAATACCCCCAATATGTGATGCTAATGCAGCAGCACCAACAAAACAATCACAACTACGGATTCTCAAATTCCACAGCACAGATATTAGGCCACAGTGAAGCCTCACTATCATCAGTGGCAGCAGAACACAGAGATCATCAAAACGTGAGCAGTGATCAGTGCCCCCCAGATGCAACAACAACAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1311 0.4584 MGMVYADMDSLSLCSNYGVVSSHQDNCYVSNGGTNWGFPFMRECPNFEDHPNNSDDVAEEGKGSYSSGEDSDKVNHNANNFNDENSPNENSNSGGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRLSQSSSVYRRVEELNTTTTTSSTLVSRNTATAEQQPPPPYCLNLPNNGGLANNINMPSSPYAATPFHGGVVAVAPSSGVEFGLLNGSPHMTAAKEAFSTPKLVPHIALYPQQTPLDFFSGVRSSNDMVGEYFGQNDHHQPSFGFNPQYPQYVMLMQQHQQNNHNYGFSNSTAQILGHSEASLSSVAAEHRDHQNVSSDQCPPDATTTIPPPFIDFLGVGAT* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1936 436 ProSiteProfiles Myb-like domain profile. 104 150 IPR001005 -
Gso7g1936 436 Gene3D - 157 228 - -
Gso7g1936 436 PANTHER MYB TRANSCRIPTION FACTOR 1 436 - -
Gso7g1936 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 205 IPR017930 -
Gso7g1936 436 MobiDBLite consensus disorder prediction 232 254 - -
Gso7g1936 436 MobiDBLite consensus disorder prediction 49 103 - -
Gso7g1936 436 CDD SANT 158 198 IPR001005 -
Gso7g1936 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 150 IPR017930 -
Gso7g1936 436 SUPERFAMILY Homeodomain-like 104 197 IPR009057 -
Gso7g1936 436 SMART sant 103 152 IPR001005 -
Gso7g1936 436 SMART sant 155 203 IPR001005 -
Gso7g1936 436 MobiDBLite consensus disorder prediction 70 98 - -
Gso7g1936 436 Pfam Myb-like DNA-binding domain 104 150 IPR001005 -
Gso7g1936 436 Pfam Myb-like DNA-binding domain 156 199 IPR001005 -
Gso7g1936 436 MobiDBLite consensus disorder prediction 49 69 - -
Gso7g1936 436 PANTHER MYB PROTEIN-RELATED 1 436 - -
Gso7g1936 436 MobiDBLite consensus disorder prediction 232 251 - -
Gso7g1936 436 CDD SANT 107 148 IPR001005 -
Gso7g1936 436 Gene3D - 104 155 - -
Gso7g1936 436 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1936 Gso-Chr7 42972892 42975465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1936 56 220 MYB Transcription Factor Family AT1G69560 69.277 3.86e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g1936 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1936 K09422 - gmx:100810632 827.78