Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1929 ATGAGTTCGGGTAGCAGCCACAGCAGTGAGAAGGAGAAGGAGAAACAGAGGGTGAGTCGCACGTCGCTGATACTGTGGCACGCGCACCAAAACGACGCCGGATCGGTGCGCAAGCTCCTCCAGGAGGATCCCTCGCTCGTCAAGGCCAGGGACTACGACAACCGAACGCCGCTCCATGTGGCGTCCCTCCACGGCTGGATCGACGTCGCCACGTGCCTCATCGAGTTCGGCGCCGACGTCAACGCGCAAGATCGCTGGAAAAACACCCCTCTGGCGGATGCGGAAGGAGCTAAGAAGAGTAATGTGATCGAGCTCTTGCAATCGCATGGAGGATTGTCTTTTGGGCAAAATGGAAGCCATTTCGAGCCGAAGCCGGTAGCGCCGCCGTTGCCGAACAAGTGTGATTGGGAAGTCGAGCCTACCGAGCTCGACTTCTCCAACTCGGTGCGAATCGGAAAGGGTTCTTTTGGTGAGATTTTAAAAGCCCATTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAAGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTTACTGCCAGGAAGCCCCTTATGCTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTGCACTTAGTCCTGCAACAGCTATCAACTTTTCCATGGATATTGTCAGAGGAATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCCGACCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACGGTCCAGAGTTCTCATGATGTATACAAAATGACTGGTGAAACTGGGAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTACGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTCGTGAACCTTATGAAGGAGCAAAATACGCTGCTGAGGGACACAGGCCTCATTTTCGGGCAAAGGGTTATACTCCTGAATTGCAAGAGTTAACGGAGCAGTGTTGGGCTCATGACATGAGTCAGAGACCATCCTTCATAGAGATCCTAAAACGGCTTGAAAAGATCAAGGAGAATTTACCTACAGAGAATCACTGGCACTTGTTTACCTCATAA 1266 0.4803 MSSGSSHSSEKEKEKQRVSRTSLILWHAHQNDAGSVRKLLQEDPSLVKARDYDNRTPLHVASLHGWIDVATCLIEFGADVNAQDRWKNTPLADAEGAKKSNVIELLQSHGGLSFGQNGSHFEPKPVAPPLPNKCDWEVEPTELDFSNSVRIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTARKPLMLITEYLRGGDLHQYLKEKGALSPATAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFASREPYEGAKYAAEGHRPHFRAKGYTPELQELTEQCWAHDMSQRPSFIEILKRLEKIKENLPTENHWHLFTS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1929 421 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Gso7g1929 421 Gene3D - 2 121 IPR036770 -
Gso7g1929 421 SUPERFAMILY Ankyrin repeat 24 111 IPR036770 -
Gso7g1929 421 Gene3D Phosphorylase Kinase; domain 1 129 224 - -
Gso7g1929 421 SUPERFAMILY Protein kinase-like (PK-like) 140 416 IPR011009 -
Gso7g1929 421 PRINTS Tyrosine kinase catalytic domain signature 220 233 IPR001245 GO:0004672|GO:0006468
Gso7g1929 421 PRINTS Tyrosine kinase catalytic domain signature 258 276 IPR001245 GO:0004672|GO:0006468
Gso7g1929 421 PRINTS Tyrosine kinase catalytic domain signature 374 396 IPR001245 GO:0004672|GO:0006468
Gso7g1929 421 MobiDBLite consensus disorder prediction 1 20 - -
Gso7g1929 421 ProSitePatterns Protein kinases ATP-binding region signature. 151 172 IPR017441 GO:0005524
Gso7g1929 421 SMART ANK_2a 53 82 IPR002110 GO:0005515
Gso7g1929 421 SMART ANK_2a 86 116 IPR002110 GO:0005515
Gso7g1929 421 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 413 - -
Gso7g1929 421 Gene3D Transferase(Phosphotransferase) domain 1 225 418 - -
Gso7g1929 421 SMART serkin_6 145 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1929 421 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Gso7g1929 421 ProSiteProfiles Protein kinase domain profile. 145 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1929 421 Pfam Ankyrin repeats (many copies) 54 91 IPR002110 GO:0005515
Gso7g1929 421 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 7 413 - -
Gso7g1929 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Gso7g1929 421 CDD STKc_MAP3K-like 151 403 - -
Gso7g1929 421 Pfam Protein tyrosine and serine/threonine kinase 150 403 IPR001245 GO:0004672|GO:0006468
Gso7g1929 421 PIRSF ILK 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1929 Gso-Chr7 42745831 42753132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1929 2 421 MAP Kinase Kinase Kinase AT1G14000 82.857 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Gso7g1929 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1929 - - gmx:100815995 852.818