Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1920 ATGGAGGAGAGGAAGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATTATGACTGAAGAAAGAAGCAACGATGTTGTTGTTGTTGATGGTGATGATAACAATGACAACATGTTCATCAAGTTGGATGGTACTGTGATGAGGAATAATAAGAAGAGAGATTTGTTATGGTGTGAAGATAATAACAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAGTGAGGTTTGTGCATTCTGGTGGTGGTGCCAATGCCAACAACAATGAACAGCAACAGAATAAGGAGGATAAGAGGTTCTGCAAAGAGTGTGGGAAAGGTTTCCCATCACTGAAGGCTCTCTGTGGCCACATGGCTTGTCACTCAGAGAAAGAGAAGAGAACAACAACAACAACCATCAAGTTTGAAGAAGAGAAACTGGTTATGGATAGTCGTTCTGACACCGAGACTTGTGCTCCAACAACTCATCCAAGGAGATCCAAGAGAATGAGGGTGAAGAAGACCATTAACCTTTCCAATCACAACCCTTTTTTTTCTTTTTCTTCTTCTTCTTCTTCTGGTGTTGTTCCTTTGGCCAATGGTTCTTCACCTGTGTCAGAGGTGGAGCAGGAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTGTCTAGAGATTCTAGCTTCAACTTCAAGGGTGGTCGTTTTGCTTCGGTTACTGAATCTTCTGATAACAACTCGGTTATTCTAGAAGCAAAATTATCATCTCCTGATACCCGGATTGGTGTCAGCAATGGTAATAATAACAACAACTTTGTCTCTAATAATCATGCTTATGATCTTGTGGCGAAGAAGTTGCTTAAGGTTAAGGATATTAAGTTTAAGTCTGCTGAGTTTGGTGCTTCTGATAATTATTCAGGTTCTAGATTTTTCAGATATGGTCCCAAAACCAAAATGGTAGACTCAGATTTCTCGAATGATGAATTCAGGTGGTCCAAAGTGGAGGGTAAGTCAAGCAAGTACACTGCATCTGTAGTGAAGAAATTAGGGGTGGAAGATTTGGATTATGATACAACACATGGAACTACAAGGAAGTTTGATTCAATAAAGAGGAACAACTATGATTTAGTTGGTGTTTCTAGCAAGAAGATAGCAAGTGGTTTTGGCAATGAGGTATATAAGAATGGCACAAGAGGTTGGAAGTATGAGTGTTTTGAAGTTGAAAGGGACAACGATTCTTATGATTCAATAGATGATGAGAGTAATGAAAACAGTTCAGAGACTGAATCTTTTCCTGCTCCAAGGTCTCATCATAAGAGTAAGGCTCTCAATGGAAAGAAATGCACAAAGCCCAAGAAGAAGTTGAAGCCTTCTAAGAAAAGCAAGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTAGGGGGTCACAAAAGATCACATTTCATTGGAGGTTCTGAAGAAAACACTATGGTGATCAAACAAGTTCCTTACTTTATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1569 0.406 MEERKKYVCKYCSKRFPCGKSLGGHIRTHIMTEERSNDVVVVDGDDNNDNMFIKLDGTVMRNNKKRDLLWCEDNNNPIYGLRENPKKTVRFVHSGGGANANNNEQQQNKEDKRFCKECGKGFPSLKALCGHMACHSEKEKRTTTTTIKFEEEKLVMDSRSDTETCAPTTHPRRSKRMRVKKTINLSNHNPFFSFSSSSSSGVVPLANGSSPVSEVEQEEQEEVARCLMLLSRDSSFNFKGGRFASVTESSDNNSVILEAKLSSPDTRIGVSNGNNNNNFVSNNHAYDLVAKKLLKVKDIKFKSAEFGASDNYSGSRFFRYGPKTKMVDSDFSNDEFRWSKVEGKSSKYTASVVKKLGVEDLDYDTTHGTTRKFDSIKRNNYDLVGVSSKKIASGFGNEVYKNGTRGWKYECFEVERDNDSYDSIDDESNENSSETESFPAPRSHHKSKALNGKKCTKPKKKLKPSKKSKDHECPICYKIFKSGQALGGHKRSHFIGGSEENTMVIKQVPYFIDLNLPAPVDE* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1920 522 Pfam C2H2-type zinc finger 471 493 - -
Gso7g1920 522 Pfam C2H2-type zinc finger 7 29 - -
Gso7g1920 522 Pfam C2H2-type zinc finger 115 137 - -
Gso7g1920 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Gso7g1920 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 522 - -
Gso7g1920 522 MobiDBLite consensus disorder prediction 420 469 - -
Gso7g1920 522 Gene3D Classic Zinc Finger 1 48 - -
Gso7g1920 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Gso7g1920 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 471 493 IPR013087 -
Gso7g1920 522 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Gso7g1920 522 SMART c2h2final6 7 29 IPR013087 -
Gso7g1920 522 SMART c2h2final6 113 135 IPR013087 -
Gso7g1920 522 SMART c2h2final6 471 493 IPR013087 -
Gso7g1920 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 522 - -
Gso7g1920 522 SUPERFAMILY beta-beta-alpha zinc fingers 5 135 IPR036236 -
Gso7g1920 522 ProSitePatterns Zinc finger C2H2 type domain signature. 473 493 IPR013087 -
Gso7g1920 522 MobiDBLite consensus disorder prediction 446 466 - -
Gso7g1920 522 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1920 Gso-Chr7 42588241 42590649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1920 5 522 C2H2 Transcription Factor Family AT1G26610 40.223 1.70e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g1920 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1920 - - gmx:102665457 939.102