Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1917 ATGGCAAAGGAGGCCATACCAATACCAATAGGGATAGTTCTTGATTTGAACTCCTCAATTGGAAGCATGTCTAATAGCTGCATATGGATGGCATACCAGGATTTCTATGAACGTCACCCTCATTACAAAACCAGACTTGCTCTTCAAACCCGAGACTCTCGGGATAATGTTGTCACAGCAGCATCTGTAGCTCAAGAATTGTTAAATGAGAAGGTGCATGCAATCATTGGACCACAAACATCAGAACAAGCTTGGTTCGTCATAGAACTTGGAAGCAAAGCTCAAGTGCCAGTGATCTCGTTTTCCGCCACAAGTCCATCGCTTTCCTCGACCCAGAAGCCTTATTTCATTCGCGCCGCCAGGGATGATTCCTCCCAGGTGGAAGCCATAGCTGCCATTGTCCAAGGCAACGGTTGGCGCGAAATAATCCCCATATACGAAGACACCGAATATGGCAATGGTCTTAACCCATATCTAAACGATGCCTTTGTAAAAATTGGCACCCGAGTGCCTTACAGAAGTGTCATTAGTCCAGGCTCAGGGGGCGCCGAGATTTCAAATGAGCTCAAGAAGCTGAAGTTAATGTCTACAAAAGTGTTTCTTGTTCACATGAGCACTGACCTTGGGTGCAAGGTGTTTCTGGCTGCAAAGAAAGAAGGGATGATGACAATTGGATATGCATGGATAGTTACTGAAGGCCTATCTGCAGAGGTAGACCCTATGGTGCTAAAATGCATAGGAACCATGCAAGGTGTGTTGGGAGTTAGGCCAAGCCCAAAACACACTAAAAGGCTTGACAACTTCAAAGAAAGATATGGAAATACTGTAACCATCTTTGGATTGTGGGCATATGATTCTGTTTGGGCATTAGCCAAGGCTGTGGAGAAAGTTTGGGGGGAAAACGTCACTGCTACCCTTCACAACACAATCCTGGCTACCAAATTCCATGGCCTCTCTGGTAATTTCCATTTGGTTAAAGGACAACTAGAGCCATCAATTCTTGAGGTGTTCAATGTTGTGGAGCAAACAGAGAGGAGCATTGGAAATTGGATGCCAGAGAGGGGGCTTTCTAAATTAGAGCAACCAAAATGGCCTGGTAACACAACAGAGCCCCCAGCAAAGTTGAGGATTGGAATCCCACCAACAAATAGTGTCAATGAATTCAAAAAATTTCTCAACTTCTCCTTTGATGTGTTCTTTGAAGTCTTGAAGGTTTTACCCTTTCCCCTGCATTATGAACTCTTACCTTTTGAGAAACATGGAGAGACTGCTGGTACCTACGATGAACTTCTTATGCAAATCAAGGAAAAGAAGTATGATGCCGTGGTTGGGGACGTGACAATTGTGGCTAAGCGCTCAGAGTATGTTGATTTTACAATGCCATTTTCAGAATCAGGTGTGGCAATGCTGGTTTTGGCGAAGCATGATGAGAGACAAAACATTTGGATTTTCCTGAAGCCATTTAGTTGGGACCTTTGGTTGACAACTGGTGCAGCTTTCATCTTCACAGGCTTCATCGTTTGGTTTTTCGAACACCGCTCAAACACGGAGTTCAGGGGCACTCCAAAGAACCAAATCGGCATGGCTCTCTGGTTTTCCTTCTCAACACTCGTATTTGCTCATAGGGAGAAGGTAGAGAACAAATGGTCACGATTTGTGCTGATTATATGGTTCTTTGTGGTACTCATCATAACGCAAAGTTACACTGCAAGTTTAGCTTCAATTCTCACGGTACAGAAACTGCAGCCTCAGTTTATGGACGTAGAAGAGATAAAAACAAACAATTTCTTTGTGGGGTATCATAAGGATTCCTTTGTGAAAGGGCTACTAATTGAAAAGTTAGGATTCAATGAATCTAAGTTAAAGGGTTACCATGGCCCTGAGGCCTATCAACAAGCTCTGTCTCTTGGAAGCAACAATGGAGGAGTTGCTGCTGTTTTTGATGAAATTGTCTTTATTAACCTCTTTCTCATGAAATATGGCTGCAAAAAGTATCAGATTGTTGGACCAACATACAAAACCGATGGATTTGCCTTCGCATTCCCACGAAACTCTCCATTGGTTCCTTATTTTTCGAGGTCGATCTTAAACGTCACTGAAAATAAAACAACCTTTGATGGGATTAAGAAGAAGTACTTCTCAAGAGACGTCATAAGTGAAGATCCAAGTACCAGAATGGCATTTAGAAGCACTAACTTAACATTAAAGAGCTTTGGGGGGCTTTTCATCATCATATTGTTCACTTCATTTCTCGCAGTCATGGTCCATTTATTTAAGTTCATGCATTCAAAATGGACTGCTCGAGACTTTCAGCGATCCCTTTCGGAGATGATGACTGAATTGGCAAAGCATTTCAACAAAGAAGAGTGCTCTTTACATCCTCCTCAAATAATGGAGGAAGGTTCACTTGACCCTGATGGCACCAATTATCAATCAATAATTCACAACGAGGAAGATCTTAGACAGCTATAG 2472 0.4272 MAKEAIPIPIGIVLDLNSSIGSMSNSCIWMAYQDFYERHPHYKTRLALQTRDSRDNVVTAASVAQELLNEKVHAIIGPQTSEQAWFVIELGSKAQVPVISFSATSPSLSSTQKPYFIRAARDDSSQVEAIAAIVQGNGWREIIPIYEDTEYGNGLNPYLNDAFVKIGTRVPYRSVISPGSGGAEISNELKKLKLMSTKVFLVHMSTDLGCKVFLAAKKEGMMTIGYAWIVTEGLSAEVDPMVLKCIGTMQGVLGVRPSPKHTKRLDNFKERYGNTVTIFGLWAYDSVWALAKAVEKVWGENVTATLHNTILATKFHGLSGNFHLVKGQLEPSILEVFNVVEQTERSIGNWMPERGLSKLEQPKWPGNTTEPPAKLRIGIPPTNSVNEFKKFLNFSFDVFFEVLKVLPFPLHYELLPFEKHGETAGTYDELLMQIKEKKYDAVVGDVTIVAKRSEYVDFTMPFSESGVAMLVLAKHDERQNIWIFLKPFSWDLWLTTGAAFIFTGFIVWFFEHRSNTEFRGTPKNQIGMALWFSFSTLVFAHREKVENKWSRFVLIIWFFVVLIITQSYTASLASILTVQKLQPQFMDVEEIKTNNFFVGYHKDSFVKGLLIEKLGFNESKLKGYHGPEAYQQALSLGSNNGGVAAVFDEIVFINLFLMKYGCKKYQIVGPTYKTDGFAFAFPRNSPLVPYFSRSILNVTENKTTFDGIKKKYFSRDVISEDPSTRMAFRSTNLTLKSFGGLFIIILFTSFLAVMVHLFKFMHSKWTARDFQRSLSEMMTELAKHFNKEECSLHPPQIMEEGSLDPDGTNYQSIIHNEEDLRQL* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1917 823 SUPERFAMILY Periplasmic binding protein-like I 7 366 IPR028082 -
Gso7g1917 823 Gene3D - 368 481 - -
Gso7g1917 823 Gene3D - 129 292 - -
Gso7g1917 823 SMART GluR_14 374 715 IPR001320 GO:0015276|GO:0016020
Gso7g1917 823 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 763 - -
Gso7g1917 823 Pfam Receptor family ligand binding region 30 340 IPR001828 -
Gso7g1917 823 Gene3D - 29 128 - -
Gso7g1917 823 Pfam Ligand-gated ion channel 715 747 IPR001320 GO:0015276|GO:0016020
Gso7g1917 823 Pfam Bacterial extracellular solute-binding proteins, family 3 394 714 IPR001638 -
Gso7g1917 823 SUPERFAMILY Periplasmic binding protein-like II 374 716 - -
Gso7g1917 823 PANTHER GLUTAMATE RECEPTOR 8 763 - -
Gso7g1917 823 CDD GluR_Plant 374 713 - -
Gso7g1917 823 CDD PBP1_GABAb_receptor_plant 10 358 IPR044440 -
Gso7g1917 823 Gene3D - 482 605 - -
Gso7g1917 823 PIRSF IGluLR_plant 2 817 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1917 Gso-Chr7 42556055 42560492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1917 8 793 Ion Channels AT2G29100 41.549 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1917 K05387 - gmx:100800495 1642.48