Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1916 ATGACAATGTCAATGCTAAATCTCCAAAAGTACTTTCCCTCGCTCCCCTTCTACCTCATACTGTGCCTCTGGCCATTACACTTGATGGCAAGGGAGGTTACGATACCAATAGGGGTAGTTCTTGATTTGAACTCCCCAATTGGGAGCATGGCTAACAGCTGCATATGGATGGCACATCATGATTTCTATAAACAGCATCCTCGTTTTCAAACCAGACTTGATCTTCGAACAAGAAATTCTGGCGGTGATACAGTCAAAGCAGCATATGCAGCCTTTGATTTAATAACGAAAGAAAAGGTGAAGGCAATTATTGGACCTCAAAAATCAGAACAAGCAAGGCATGTAATAAACCTTGGGCGCGAGCTTGGCATCCCCATTATCTCCTTCTCCGCTACAAGTCCATCTCTTTCCCCAGCCCACACTCCCATTTTCATACGAATGGCACAAAATGATTCTTCTCAGGTGAAAGCCATAGCAGCCATTGTGGAAGCATATGGATGGCGAGAAGTTGTCCTTATATACGAAAACACTGAATACGGAAACGGTCTTGTCCCACATCTGATAGATGCATTGGATGCAGTGGACACAAAAGTACCTTACAGAAGCGTCATTGACCCCATTTTTGAAGAGTCCCACATTTTGGAAGAGCTCGAAAATCTCAAGGAAAATTCGACAAGAATATTCATTGTTCACATGACGGGTGAACATGGGTCGAGATTCTTTTCAGCTGTAGAGAAAGCTGGAATGATGAGTGAAGGGTATGGATGGATAGTCACTGAAGGGTTATCTGTTGAGTTAGATCCTTCAGCTCTAGAAAGAATGGACAACATGCAAGGTGTCTTGGGAGTGAGGACAATAGTGAGAAACAATGAAAAGCTCGATGATTTTAAGAAAAGATGGAAAACCTTGTCTTTTATGGAAAACAACATAAAGTATCACGCTTATCGTACTCATACCATCACATTGTTTGGGTTGTGGGCTTATGATACAGTGTGGGCATTAGCCATGGCCGTAGAAAATGCAACCAATTATGGGAAACAAAGTGCTTCCCTTGTAAATGCAATCCTAGCTACGAAATTCCAAGGCCTATCTGGGTATGTTGATTTGAAAGGAGGACAATTAGAGTCGTCAGTGGTTGAAGTGTTCAATGTGATAGGACACAAAGAGAGAATTATTGGATATTGGAGCCCTAAAAGAGGGCTATTCCAAGATGACCAAGAAAAGCAGAAAGTGAGGCAGCCAGTTTGGCCAGGTTACACAATGGATCAGCCACCCAAGTTGAGATTTGGGGTTCCTGTGAGAAAGGGTTTCACTGAATTTGTAAAAGTGGAAACCATATTTAACACCACAAAAGTTTCTGGGTTTGTTGTTGATGTGTTTTTAGAGGTCTTGAAGGCATTGCCTTTCTCAGTATCATACGAATTCGTCCCCCTAGAAAACTATGGCGCCCTTGCTGGACCTATTGCAAACAACAAGTCCATGTTCGATGCTGGAGTCGGAGACATAACAATTGTTTATGATCGCACAAATTATTTAAATTTCACGTTGCCTTATTTAGAATCTGTGGTGTCAATGGTAGTTTCAATGAAGCATGATGAGAAACGAAACATGTGGGTGTTCTTAAAGCCTCTAAGTTGGGGTCTTTGGTTGACTACTGGTGCAGCCTTGGTCCTCATCGGTTTCGTTGTGTGGTTTCTAGAGCATCGCTCAAACAACACAGCCTTTAGGGGGACCCCAAAACAACAACTTGGCATTGTTTTTTGGTTTTCCTTCTCCACACTTGTCTTTGCTCACCGGGAGAGATTGGTAAGTAATTGGTCCAGAGGTTTGTTGATTATATGGATATTTGTAGTGCTCATCATCACCCAAAGTTACACTGCAAGTTTAACTTCGATGCTAACAATAGAAAGCCTACAACCGGAATTCATTGACATAAAAGAGATAAAAAGGAATAATTATTTTGTGGGATATCAGAATCAATCCTTCGTGAAAACAATTTTAATAAATGAATTAGGATTCAATGAGTCTCAGTTGAAGGCCTATAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAATGGTGGGGTGGCGGCTATCTTTGATGAAAGTCCATACATCAACGTTTTTCTATCAAAATATGACACTGGCTATGCTACGGTGGGACCGTTTTATAAAACAAATGGACTTGCCTTTGCATTTCCCCCACAGTCACCTCTAGTGCCATATTTTTCGAGGGCACTCCTAAATGTCATTGAAGATAAAGACAAGTTTGAAGGGATTAAAAACAAGTATTTCTCGACAAGAATTGTCTCTAAAGATCAAAGTACCTCAATTTTAGACAGCCAAGGTCTTACGGTGAATAGCTTTGCAGGTCTTTTCATCATCACAACAATTGCCTCATTCGTATCATTCACATTTTATGTGTTTACTTTCCTATACTCACAATAG 2460 0.4098 MTMSMLNLQKYFPSLPFYLILCLWPLHLMAREVTIPIGVVLDLNSPIGSMANSCIWMAHHDFYKQHPRFQTRLDLRTRNSGGDTVKAAYAAFDLITKEKVKAIIGPQKSEQARHVINLGRELGIPIISFSATSPSLSPAHTPIFIRMAQNDSSQVKAIAAIVEAYGWREVVLIYENTEYGNGLVPHLIDALDAVDTKVPYRSVIDPIFEESHILEELENLKENSTRIFIVHMTGEHGSRFFSAVEKAGMMSEGYGWIVTEGLSVELDPSALERMDNMQGVLGVRTIVRNNEKLDDFKKRWKTLSFMENNIKYHAYRTHTITLFGLWAYDTVWALAMAVENATNYGKQSASLVNAILATKFQGLSGYVDLKGGQLESSVVEVFNVIGHKERIIGYWSPKRGLFQDDQEKQKVRQPVWPGYTMDQPPKLRFGVPVRKGFTEFVKVETIFNTTKVSGFVVDVFLEVLKALPFSVSYEFVPLENYGALAGPIANNKSMFDAGVGDITIVYDRTNYLNFTLPYLESVVSMVVSMKHDEKRNMWVFLKPLSWGLWLTTGAALVLIGFVVWFLEHRSNNTAFRGTPKQQLGIVFWFSFSTLVFAHRERLVSNWSRGLLIIWIFVVLIITQSYTASLTSMLTIESLQPEFIDIKEIKRNNYFVGYQNQSFVKTILINELGFNESQLKAYNTPEEYHEALSKGTNNGGVAAIFDESPYINVFLSKYDTGYATVGPFYKTNGLAFAFPPQSPLVPYFSRALLNVIEDKDKFEGIKNKYFSTRIVSKDQSTSILDSQGLTVNSFAGLFIITTIASFVSFTFYVFTFLYSQ* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1916 819 Gene3D - 423 536 - -
Gso7g1916 819 PANTHER GLUTAMATE RECEPTOR 35 817 - -
Gso7g1916 819 SUPERFAMILY Periplasmic binding protein-like II 423 770 - -
Gso7g1916 819 CDD PBP1_GABAb_receptor_plant 37 403 IPR044440 -
Gso7g1916 819 Pfam Receptor family ligand binding region 58 385 IPR001828 -
Gso7g1916 819 SUPERFAMILY Periplasmic binding protein-like I 34 396 IPR028082 -
Gso7g1916 819 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 817 - -
Gso7g1916 819 Pfam Ligand-gated ion channel 771 803 IPR001320 GO:0015276|GO:0016020
Gso7g1916 819 Pfam Bacterial extracellular solute-binding proteins, family 3 449 770 IPR001638 -
Gso7g1916 819 PIRSF IGluLR_plant 8 819 IPR017103 -
Gso7g1916 819 CDD GluR_Plant 426 769 - -
Gso7g1916 819 SMART GluR_14 426 771 IPR001320 GO:0015276|GO:0016020
Gso7g1916 819 Gene3D - 46 377 - -
Gso7g1916 819 Gene3D - 537 671 - -
Gso7g1916 819 Gene3D - 150 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1916 Gso-Chr7 42542491 42550285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1916 17 817 Ion Channels AT2G29110 43.381 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1916 K05387 - gmx:100799966 1627.45