Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1899 ATGGAGCTAGAGGTGCAGGTGGTGGGAGGCATAGACTCCTGCTTCGTCTCCCTCCCTCTCTCTCTCATCCAAACTCTCCAGTCCACGCGCTCATCACCGATCCCTCAAATCCTCGCTCTCGAACTTCGCTCTCCGACTCACCCCCCTCACACCTGGTTCGTCGCTTGGTCCGGCGCCACTTCCTCTTCTTCTTCCGCCATAGAGGTTTCTCCTCAATTTGCGGAGTGTGTTTCGTTGCCGAATCATGCTACTGTTCAAGTCAGAGCTGCTCCTAATGTTCCACACGCTTCACTGGTAACGATAGAGCCGCACACCGAGGATGACTGGGAAATTTTGGAGCTTAACGCGGACCAAGCCGAAGCTCAAATCCTCAGCCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTACATGGTCATACTGTCATCACATTCCAAGTGGCTTCTGTTTTTCCGAAGAACGTGGTGGTACAACTCATGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGACGCAAAAAAAGTTCAGATTCAGCAGGAGATTCACATCTAGACTCCTCTAATAAAGAGCATACTGCTAAGATGCTGCTTCGTTTACAAGATCCAGATGGATTATGTAGTACCAGTACTCATGTCAAAGGAGTTGAGCTTCATGTAGGGCTTACTTCTGTTGCTTTTGTTCACCCAGAAACAGCCAAAAAATACTCATTCAACATGCTTCAGTTGGTTTCGATAGTACCCAGAGTAACCAAGGAGAATGTTAATATTTCCAGATCTAATATTATGAAAGCCAAAAGTGGTCCAGCTACTAATGAAGTTGAGAATGGATATACTGACAAGACAGAATATCGACAAACAATTGTTCAGCTGTTGATTTCAGAATCTGTGGCTGAAGGACATGTGATGGTAGCCAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTACATTCATGGGTTTATTTGAAGGCATGCGATATTATTTTGGAAAAAAGTATTCCTTCCACCTCTCTTTTTCCGTGCCAATTCAAACTATTAAAGCAAGAGAATGCTGTTGAGAAAGATGGTCTAGAAGTTTTTCATGGCCACAAGAATCACATTGATGAAAATTTGCATGCAAAACCTACATCAGGTGTCTTTGTGGATACTATAGATTGGTCAATCCAAAATGAAGTTGCAGCAGCTCTCTCTGATGAATCCAGTTACAAAGCAGAGGAAGAGGCTACAAATCAATCTCAGAATCAAAGGGGATTACAGAGTCTTGTACGACTATGGTATATCATGCAACTTAAGGCAATTACTTCCATTTCGGGTATGGAGGTTAGTTCGTTGATTATAGGTAATAAAACCTTGCTTCATTTTGAAGTAAGCTGTTACAAGCTTAGGAATAATGGGAAGGTTCAGTTAGCCTATAATTCTTCAGAGAACAGTGGCAAGGCAGCTGAGATGTTGTTTTTATTGACCTTTGGTGAAGAATATCTGCATCATGGGAAACTTAATGCATATGAAGTTGCTCTTGGTGGAAGACTCAATAACATCAATATTGGGGACTTGAAGCTTTTTGAAAGGATGAAATTGTGTGATCCTGTGTCTATTCATTCTATAGAAGAGAGAGCCTCCGAAGACCACATTAGTTCAAATGTATCTTCCCTTGGTTGGATGGAGAAAGCTGCAGATGATGTTATCAACAGGATGTTGATATTGTTATGTTCTGCATCTGGTTTGTGGTTTGGCTCACACAACTTACCACTCCCCGGACATGTTCTGATATATGGACCTTCTGGCTCTGGGAAAACTATATTAGCAAGAACTGTGGCAAAATCCCTTGAGAATCGTGAGGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCCCTGGAGAAGGTCCCAGTTATTCGCCAAGAACTTGCAAACCATGTAACTGAAGCTTTAAACCATGCTCCTTCTGTTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGATTCTGAAGGATCTCAACTGTTAATGTCTGTTGCTGGACTCACAGATTTTCTAATTGACATCATGGATGAATATAGGGAGAAGAGGCAAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAGTCTTTGAGCTCTTCAGGACGGTTTGACTTTCATATAAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAGAGGCGTCAGTTGCAATGTGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTTGCCGTTTTCTGCCATCTAATGCTGCCATTTATGAGCATGAGAGTCCTGCTTTATTAAGGGAGGATTTCTCTCAGGCAATGCTTGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCAGCTTCTGATGATGGCCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCGAAAACTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGTAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGTTATTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATAGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTGTTCTGTGACTTTCCGTCTTTGCATGAGAGATTGGAAATTCTTGCAGTACTTTCTAGAAAGTTACCAATGGCCAATGATGTTGATTTGGATACAATAGCTAATATGACCGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCGCAGCTTGCAGCGGTTCATGATGTTCTGGACAGTGTGGATGCCTCTAGGCCAGAAAAAACACCAGTTATTACTGATGCTCTTCTGAAGTTCACAGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAGAGAAGACTCTACAATATATATCACCAGTTCCTGGATTCAAAAAGATCGGTTGCTGCCCAGTCAAGGGATACAAAAGGCAAGAGGGCAACTCTAGCTTGA 3393 0.4262 MELEVQVVGGIDSCFVSLPLSLIQTLQSTRSSPIPQILALELRSPTHPPHTWFVAWSGATSSSSSAIEVSPQFAECVSLPNHATVQVRAAPNVPHASLVTIEPHTEDDWEILELNADQAEAQILSQVRIVHEGMRFPLWLHGHTVITFQVASVFPKNVVVQLMPGTEVAVAPKRRKKSSDSAGDSHLDSSNKEHTAKMLLRLQDPDGLCSTSTHVKGVELHVGLTSVAFVHPETAKKYSFNMLQLVSIVPRVTKENVNISRSNIMKAKSGPATNEVENGYTDKTEYRQTIVQLLISESVAEGHVMVAKSLRLYLRASLHSWVYLKACDIILEKSIPSTSLFPCQFKLLKQENAVEKDGLEVFHGHKNHIDENLHAKPTSGVFVDTIDWSIQNEVAAALSDESSYKAEEEATNQSQNQRGLQSLVRLWYIMQLKAITSISGMEVSSLIIGNKTLLHFEVSCYKLRNNGKVQLAYNSSENSGKAAEMLFLLTFGEEYLHHGKLNAYEVALGGRLNNINIGDLKLFERMKLCDPVSIHSIEERASEDHISSNVSSLGWMEKAADDVINRMLILLCSASGLWFGSHNLPLPGHVLIYGPSGSGKTILARTVAKSLENREDILAHIIFVSCSKLALEKVPVIRQELANHVTEALNHAPSVVIFDDLDSIISTPDSEGSQLLMSVAGLTDFLIDIMDEYREKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRQLQCDDDILLDVAVKCDGYDGYDLEILVDRTVHAAVCRFLPSNAAIYEHESPALLREDFSQAMLDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSLHERLEILAVLSRKLPMANDVDLDTIANMTEGFSGADLQALLSDAQLAAVHDVLDSVDASRPEKTPVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDTKGKRATLA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1899 1130 MobiDBLite consensus disorder prediction 171 191 - -
Gso7g1899 1130 Gene3D - 838 1100 IPR027417 -
Gso7g1899 1130 Pfam AAA+ lid domain 1029 1068 IPR041569 -
Gso7g1899 1130 CDD AAA 584 735 - -
Gso7g1899 1130 ProSitePatterns AAA-protein family signature. 977 995 IPR003960 GO:0005524|GO:0016887
Gso7g1899 1130 Pfam ATPase family associated with various cellular activities (AAA) 877 1004 IPR003959 GO:0005524|GO:0016887
Gso7g1899 1130 Pfam ATPase family associated with various cellular activities (AAA) 590 735 IPR003959 GO:0005524|GO:0016887
Gso7g1899 1130 Gene3D - 1008 1087 - -
Gso7g1899 1130 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Gso7g1899 1130 Pfam Peroxisome biogenesis factor 1, N-terminal 99 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Gso7g1899 1130 PANTHER AAA-FAMILY ATPASE 3 1127 - -
Gso7g1899 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1104 IPR027417 -
Gso7g1899 1130 Gene3D - 738 817 - -
Gso7g1899 1130 SUPERFAMILY ADC-like 10 89 IPR009010 -
Gso7g1899 1130 SMART AAA_5 586 738 IPR003593 -
Gso7g1899 1130 SMART AAA_5 873 1009 IPR003593 -
Gso7g1899 1130 Gene3D - 94 173 - -
Gso7g1899 1130 PANTHER - 3 1127 - -
Gso7g1899 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 811 IPR027417 -
Gso7g1899 1130 CDD AAA 843 1006 - -
Gso7g1899 1130 Gene3D - 535 737 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1899 Gso-Chr7 42275541 42290179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1899 590 793 Calmodulin-binding Proteins AT3G56690 27.962 2.56e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1899 K13338 - gmx:100803882 2189.46