Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1897 ATGAAAGATGGTGGTAGAAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGACTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAAAGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTAGCAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGCTGCGTAGGGGCCATCTCATCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCCGTGGCACAGGCTGAAGCTGTGCACCTCAGGGTGCGCCAAACTGCATCACTCTACAGCCCCACTAGCCCAACCAACAGTGGCTCTCCATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGAACAGCTATGGTGATTCAATGTGGTGA 480 0.5104 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLAEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASLYSPTSPTNSGSPSQAKPIFDMDMVVDQNSYGDSMW* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1897 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 138 - -
Gso7g1897 159 Coils Coil 92 112 - -
Gso7g1897 159 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Gso7g1897 159 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Gso7g1897 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1897 Gso-Chr7 42243020 42248282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1897 1 159 AS2 family AT1G31320 70.588 6.94e-75 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso7g1897 LOB 2.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1897 - - gmx:100802822 316.62