Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1888 ATGGATGCGAATCGCGAGCAAATTGTTGTTGACGTTGGATCAGTGGTGGAAGCCGTTTCTGCTGACGATGGTCACGCTCCTCTCTACAGCATCGAAAGTCTCTGCATGCGTTGCCATGAAAACGGGATTACAAGATTTTTATTGACTTCAATTCCCAACTTCAGAAAGATTTTGTTGTCAGCTTTTGAATGTCCCCACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCGCGTGGTTGTTGTTACTCTCTGGAGATCCCATCAGGCCAACAGAAGATGCTAAATCGACAAGTGGTAAAAGCGGAATCTGCTACCATTAAGATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTTATGAGAGCAGCTGATGAACTTCAGACCCTTCAAGAGGAACGCAAAAAAGTGGCTCCAGAGACAGCTGAGGCAATTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCGTTTGCACCATCATCTGATCCATCATTGACTATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGATTCCACTCACATTGAAGGAATTCATGATGAAACACCAGAAGGAGGAGAAGCTGTGACTGCTGATCAAGTGAGGAGAGAACCTCATGGGTCAATAGGGGCAACAGCTGGTCATCGAGCCATTGCACAGAGTAACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAGGTGATGACATTTCCATCTTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACTCGAATGTTTGTCACCAATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGCCGAATTCCTGAAAAAGGAAAAAGAATTACTCTTAATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAACAGAGAAAAGGCAAGTGGATAGACTTTAAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTCGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCATTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGTTGCTTATGAATCAACAAATACTACTAAAACTGAGTGA 1497 0.4282 MDANREQIVVDVGSVVEAVSADDGHAPLYSIESLCMRCHENGITRFLLTSIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPSGQQKMLNRQVVKAESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQTLQEERKKVAPETAEAIDQFLVKLRACATGESAFTFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTHIEGIHDETPEGGEAVTADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPSSCGACAASCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKRITLNVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEQRKGKWIDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKEDNQLSFEEYERSWEQNEELGLNDIDTSSADVAYESTNTTKTE* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1888 498 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Gso7g1888 498 Gene3D ZPR1, A/B domain 79 220 IPR042451 -
Gso7g1888 498 SMART zpr1 289 449 IPR004457 GO:0008270
Gso7g1888 498 SMART zpr1 33 193 IPR004457 GO:0008270
Gso7g1888 498 Pfam ZPR1 zinc-finger domain 289 447 IPR004457 GO:0008270
Gso7g1888 498 Pfam ZPR1 zinc-finger domain 33 192 IPR004457 GO:0008270
Gso7g1888 498 PANTHER ZINC FINGER PROTEIN ZPR1 8 491 IPR040141 -
Gso7g1888 498 Gene3D ZPR1, zinc finger domain 24 78 IPR042452 -
Gso7g1888 498 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Gso7g1888 498 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270
Gso7g1888 498 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 35 217 IPR004457 GO:0008270
Gso7g1888 498 Coils Coil 129 149 - -
Gso7g1888 498 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 8 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1888 Gso-Chr7 42049826 42063394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1888 1 496 C2H2 Transcription Factor Family AT5G22480 75.453 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1888 K06874 - gmx:100798741 981.474