Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1860 ATGTCTGATTCATTTGGTAGCACCTTTCACTCTTCCACTCCAAACTCCACCCTCAATTCCCATGCACCCCCGAAAATCACCACATTCTGCTCAATAGCCCAACCTTATTGCATTTGCACCCACTGCAACCACATCCTCACCTTCAACCACCATGTTGGTAATTTAGCAGAGGAAGGGACAAATAGCACAGGGTCCCATAACAATAATGTGCAGTCTCAGCCGCAACATAGCACAAGGTGGAGTCCAACGCCAGTGCAGTTACTAGTCCTTGAGGAATTGTATAGACAAGGCACAAAAACACCCTCAGCTGAACAAATTCAACAAATAGCTTCGCAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCATAAGGCCAGAGAGAGACAGAAGCGGCGTAGAAGGGAAATGGAGGAAAATAATAATAACAATGCTGCTGCTTCTTCTTCTTCTGGTGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCACTGGATATAGCAGAAAAGGGATCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCAGCATACAAGTTTTAAGGAGAAACATATCAGAAAAACAAGCTAAGTTGCAAGAAATGGAAATGCCTTGTTTCCTTCCTATTACTATAGCAGCTCCTACTACAACTTCACACAGAACAACAACACATAACACACAACTTTTATCCCCTCAAAACTATAATAATTTATCATCTTCACTCATCAACAGAGAAAGTTTAAACTACTATGGTGGTGATGAAAATGCAGATTCTCGAACCCTTGACCTATTTCCACACAAGAGGGATGACCAAGATGGAATTTCTCTTGCTGAGAGGAAATCATCATCTATGCTCTGTGCTAGTGCTTCTATGGACACTGAAATCACCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 1002 0.4271 MSDSFGSTFHSSTPNSTLNSHAPPKITTFCSIAQPYCICTHCNHILTFNHHVGNLAEEGTNSTGSHNNNVQSQPQHSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNNNNAAASSSSGEGLKETGCGVKETKKWASTSNCSGHAEESALDIAEKGSNGWTQFEERGSIQVLRRNISEKQAKLQEMEMPCFLPITIAAPTTTSHRTTTHNTQLLSPQNYNNLSSSLINRESLNYYGGDENADSRTLDLFPHKRDDQDGISLAERKSSSMLCASASMDTEITSNQFFEFLPLRN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1860 333 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 333 IPR044555 GO:0003700|GO:0099402
Gso7g1860 333 ProSiteProfiles 'Homeobox' domain profile. 73 138 IPR001356 GO:0003677
Gso7g1860 333 Pfam Homeodomain 77 137 IPR001356 GO:0003677
Gso7g1860 333 MobiDBLite consensus disorder prediction 135 165 - -
Gso7g1860 333 MobiDBLite consensus disorder prediction 1 20 - -
Gso7g1860 333 Coils Coil 134 154 - -
Gso7g1860 333 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 333 - -
Gso7g1860 333 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Gso7g1860 333 MobiDBLite consensus disorder prediction 59 80 - -
Gso7g1860 333 Gene3D - 60 154 - -
Gso7g1860 333 MobiDBLite consensus disorder prediction 148 162 - -
Gso7g1860 333 CDD homeodomain 78 132 IPR001356 GO:0003677
Gso7g1860 333 SMART HOX_1 75 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1860 Gso-Chr7 41464148 41468056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1860 70 333 Wox Gene Family AT3G18010 34.185 1.92e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso7g1860 Homeodomain 3.4e-19 CL0123