Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1853 ATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCGACTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATACTATTTGTTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAAGATGGCCTTGTTACAGTTGGCATTGGTGGACCAAGTGGATCTGGTAAAACTAGCTTAACAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGAATGATGTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGCAAAAGAGGCGTGTTGGCTATAAAGCAATAAAGAGCCCTTCATCTGTGGTGGTAATAGTTGATGGCACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATTACCTTATTGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAGTCTACAAGGTTAAATGCAGAAGTAAGTCTTCAGATGGACATTCAGGTTCTGCTTTTCAAGGAAATGAAGCCCAAACAGACAATTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGCGGATTATTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAGCGCGCCTCCACAACTGTTAATAATGGCAAGGTTTCAATGTCTTTTGAAACCATTGATGTTCTTGGTGAGACATTCATGGTGATGAGAGGAACTAATAGAAAGACTGTTGGAACAGAAGCATTAAGGATGGGCATTAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAAAGAAAAGGTGTACCTCGTCTTAGTACACCACCACTTGTGTCTAATACAACTGTGCCTGGTAGTCAAGAAACCATGATCGCTGCGCCAAAGCCAATTCGTGTTACCCCTAACCTTGTTACCGGGCTTGATGATTTACCTCAGCCGTGGACTCGATCTCCAACAAAATCTAAAATGGAACCTGTTGTGGCTGAATGGCATTTCATATCTTCAGATTCTTCCCTGCCTGACAACTCAGTCCTAGACTTCTCTCATGAAGCAACCACAGATCCTTCATCTTTCAGGGATAGTGTTAGGCTTGCTCCAATGCCTGATTCATTTGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTCCCAGTCATAGTTGGAATCGGAGGTCCAAGTGGATCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAACATAATTGGTTGTGAAGTAGTTTCACTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGTGCACTTGATTTATCCTTGCTATCAAAGAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCATCTATGCTCTGCATCCTGATATTCGAATATCCCTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATTTGATCTCACGTGTTCAAAGGGATAAGAGTAGAGTGGGGTGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTCATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAAAAGTAGCATATCAAGATATTGTTGCAATTCTTGATTCAGCAAAATTTTGCAGTTCGGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAATGGGCAGTTGAGAGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCGTTGCTGATACGAGAGCCTATCAAAGAAGGGAACTTTATCATTCAGCCTAAAGTGGATTTTGATATTGGCATTAGTACGGTTGCTGGTCTTCTTAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTTTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCATACATTCAGATAAAGGGTGTCAATAAAGATGCAGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAGCAATAGAAAGAACTTCTGGTGGGATTCATTCTCAGCAATCAGCAAGGCTGCTGGAGATTGTTGAGTTTATTCAATCTCAGGGATGTAGCTCTGCTTCAGAATCCTCATCAAGTAGGGTAGTCTCTCCAATTGAAGGGGTTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGATGGCTAGCGATAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTCGTTGGTTATTCACTGTATCAAAGGAAGCGTCAATAA 2883 0.3989 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVIGCTVISMENYRDGVDEGNDVDSIDFDTLIKNLEDLTKGNDTSIPEFDYQQKRRVGYKAIKSPSSVVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAVYKVKCRSKSSDGHSGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNNGKVSMSFETIDVLGETFMVMRGTNRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVPGSQETMIAAPKPIRVTPNLVTGLDDLPQPWTRSPTKSKMEPVVAEWHFISSDSSLPDNSVLDFSHEATTDPSSFRDSVRLAPMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGIYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGIPSNGQLRDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIHSQQSARLLEIVEFIQSQGCSSASESSSSRVVSPIEGVIEEMQSRIRRLERWLAINTVLWTFLMSALVGYSLYQRKRQ* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1853 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Gso7g1853 960 SUPERFAMILY CYTH-like phosphatases 720 867 IPR033469 -
Gso7g1853 960 Pfam Phosphoribulokinase / Uridine kinase family 65 223 IPR006083 GO:0005524|GO:0016301
Gso7g1853 960 Pfam Phosphoribulokinase / Uridine kinase family 527 692 IPR006083 GO:0005524|GO:0016301
Gso7g1853 960 Gene3D - 524 701 IPR027417 -
Gso7g1853 960 PRINTS Uridine kinase signature 525 542 - -
Gso7g1853 960 PRINTS Uridine kinase signature 552 563 - -
Gso7g1853 960 PRINTS Uridine kinase signature 646 656 - -
Gso7g1853 960 Gene3D - 63 243 IPR027417 -
Gso7g1853 960 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 612 951 - -
Gso7g1853 960 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 487 612 - -
Gso7g1853 960 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 421 - -
Gso7g1853 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 695 IPR027417 -
Gso7g1853 960 Gene3D - 710 872 - -
Gso7g1853 960 PANTHER URIDINE KINASE 612 951 - -
Gso7g1853 960 PANTHER URIDINE KINASE 2 421 - -
Gso7g1853 960 PANTHER URIDINE KINASE 487 612 - -
Gso7g1853 960 CDD UMPK_like 64 226 - -
Gso7g1853 960 CDD UMPK_like 527 695 - -
Gso7g1853 960 SMART AAA_5 524 668 IPR003593 -
Gso7g1853 960 SMART AAA_5 61 211 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1853 Gso-Chr7 41336834 41350489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1853 520 683 PRT Gene Family AT1G55810 27.528 1.98e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1853 - - gmx:100778905 1819.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1853 7 41336834 41350489 Gso5g0134 5 1477933 1486980 PCT